Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.19■□□□□ 0.34
AP3B1O00203 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.19■□□□□ 0.34
AP3B1O00203 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.19■□□□□ 0.34
AP3B1O00203 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.19■□□□□ 0.34
AP3B1O00203 AL391256.1-201ENST00000443260 1855 ntBASIC17.19■□□□□ 0.34
AP3B1O00203 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 HCG4P8-203ENST00000443049 980 ntBASIC17.19■□□□□ 0.34
AP3B1O00203 KRT18P31-201ENST00000506277 1292 ntBASIC17.19■□□□□ 0.34
AP3B1O00203 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 AC091304.2-201ENST00000564639 760 ntBASIC17.19■□□□□ 0.34
AP3B1O00203 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.19■□□□□ 0.34
AP3B1O00203 AC013467.2-201ENST00000605472 835 ntBASIC17.19■□□□□ 0.34
AP3B1O00203 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.19■□□□□ 0.34
AP3B1O00203 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
AP3B1O00203 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.19■□□□□ 0.34
AP3B1O00203 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.19■□□□□ 0.34
AP3B1O00203 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
AP3B1O00203 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
AP3B1O00203 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
AP3B1O00203 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
AP3B1O00203 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
AP3B1O00203 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
AP3B1O00203 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
AP3B1O00203 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.18■□□□□ 0.34
AP3B1O00203 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
AP3B1O00203 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
AP3B1O00203 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.18■□□□□ 0.34
AP3B1O00203 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
AP3B1O00203 AL603756.1-201ENST00000606511 2163 ntBASIC17.18■□□□□ 0.34
AP3B1O00203 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
AP3B1O00203 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
AP3B1O00203 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
AP3B1O00203 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
AP3B1O00203 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.18■□□□□ 0.34
AP3B1O00203 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
AP3B1O00203 TSPY19P-201ENST00000418461 509 ntBASIC17.18■□□□□ 0.34
AP3B1O00203 TSPY18P-201ENST00000441642 509 ntBASIC17.18■□□□□ 0.34
AP3B1O00203 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.18■□□□□ 0.34
AP3B1O00203 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.18■□□□□ 0.34
AP3B1O00203 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.18■□□□□ 0.34
AP3B1O00203 AF228730.7-201ENST00000641842 219 ntBASIC17.18■□□□□ 0.34
AP3B1O00203 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
AP3B1O00203 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.18■□□□□ 0.34
AP3B1O00203 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
AP3B1O00203 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
AP3B1O00203 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.18■□□□□ 0.34
AP3B1O00203 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
AP3B1O00203 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
AP3B1O00203 RNF216P1-203ENST00000404404 2427 ntBASIC17.18■□□□□ 0.34
AP3B1O00203 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
AP3B1O00203 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
AP3B1O00203 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.17■□□□□ 0.34
AP3B1O00203 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.17■□□□□ 0.34
AP3B1O00203 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
AP3B1O00203 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
AP3B1O00203 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
AP3B1O00203 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
AP3B1O00203 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
AP3B1O00203 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.17■□□□□ 0.34
AP3B1O00203 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
AP3B1O00203 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
AP3B1O00203 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
AP3B1O00203 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.17■□□□□ 0.34
AP3B1O00203 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
AP3B1O00203 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
AP3B1O00203 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
AP3B1O00203 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
AP3B1O00203 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.17■□□□□ 0.34
AP3B1O00203 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
AP3B1O00203 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
AP3B1O00203 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
AP3B1O00203 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
AP3B1O00203 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.17■□□□□ 0.34
AP3B1O00203 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
AP3B1O00203 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
AP3B1O00203 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.17■□□□□ 0.34
AP3B1O00203 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms