Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM1O00151 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM1O00151 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM1O00151 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM1O00151 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.26■□□□□ 0.19
PDLIM1O00151 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM1O00151 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
PDLIM1O00151 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.26■□□□□ 0.19
PDLIM1O00151 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM1O00151 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.26■□□□□ 0.19
PDLIM1O00151 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM1O00151 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM1O00151 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.26■□□□□ 0.19
PDLIM1O00151 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.26■□□□□ 0.19
PDLIM1O00151 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.26■□□□□ 0.19
PDLIM1O00151 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.26■□□□□ 0.19
PDLIM1O00151 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM1O00151 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.26■□□□□ 0.19
PDLIM1O00151 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM1O00151 DBET-201ENST00000630918 3363 ntBASIC16.26■□□□□ 0.19
PDLIM1O00151 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM1O00151 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM1O00151 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.26■□□□□ 0.19
PDLIM1O00151 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM1O00151 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM1O00151 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM1O00151 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
PDLIM1O00151 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.25■□□□□ 0.19
PDLIM1O00151 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PDLIM1O00151 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.25■□□□□ 0.19
PDLIM1O00151 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.25■□□□□ 0.19
PDLIM1O00151 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 BANP-203ENST00000393207 2438 ntTSL 2 BASIC16.25■□□□□ 0.19
PDLIM1O00151 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.25■□□□□ 0.19
PDLIM1O00151 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
PDLIM1O00151 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
PDLIM1O00151 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.25■□□□□ 0.19
PDLIM1O00151 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 AC005104.2-201ENST00000427818 678 ntBASIC16.25■□□□□ 0.19
PDLIM1O00151 AC112907.2-201ENST00000448639 330 ntBASIC16.25■□□□□ 0.19
PDLIM1O00151 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.25■□□□□ 0.19
PDLIM1O00151 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.25■□□□□ 0.19
PDLIM1O00151 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.25■□□□□ 0.19
PDLIM1O00151 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.25■□□□□ 0.19
PDLIM1O00151 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PDLIM1O00151 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.25■□□□□ 0.19
PDLIM1O00151 AL009178.2-201ENST00000597278 2719 ntBASIC16.25■□□□□ 0.19
PDLIM1O00151 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.25■□□□□ 0.19
PDLIM1O00151 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 CICP4-201ENST00000447359 2812 ntBASIC16.25■□□□□ 0.19
PDLIM1O00151 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.25■□□□□ 0.19
PDLIM1O00151 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
PDLIM1O00151 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM1O00151 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
PDLIM1O00151 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.24■□□□□ 0.19
PDLIM1O00151 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM1O00151 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
PDLIM1O00151 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM1O00151 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM1O00151 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.24■□□□□ 0.19
PDLIM1O00151 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM1O00151 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM1O00151 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.24■□□□□ 0.19
PDLIM1O00151 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM1O00151 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.24■□□□□ 0.19
PDLIM1O00151 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM1O00151 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM1O00151 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.24■□□□□ 0.19
PDLIM1O00151 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM1O00151 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM1O00151 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM1O00151 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.24■□□□□ 0.19
PDLIM1O00151 HBZP1-201ENST00000354915 429 ntBASIC16.24■□□□□ 0.19
PDLIM1O00151 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.24■□□□□ 0.19
PDLIM1O00151 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PDLIM1O00151 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.24■□□□□ 0.19
PDLIM1O00151 AL671277.2-201ENST00000458060 996 ntBASIC16.24■□□□□ 0.19
PDLIM1O00151 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.24■□□□□ 0.19
PDLIM1O00151 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms