Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 AC016396.2-201ENST00000562575 1417 ntBASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 AL671277.1-201ENST00000429656 993 ntBASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 HMGN1P19-201ENST00000436976 333 ntBASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 FAM86C2P-203ENST00000528684 1004 ntBASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 METTL23-205ENST00000588302 925 ntTSL 5 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 HARS-203ENST00000431330 1774 ntTSL 2 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CTDP1Q9Y5B0 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 STOM-202ENST00000347359 870 ntTSL 2 BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 AC004461.1-201ENST00000412461 403 ntBASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 AC140658.5-201ENST00000438532 169 ntBASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 SPDYE11-202ENST00000450699 704 ntBASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 SPDYE9P-201ENST00000570642 692 ntBASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 SPDYE10P-202ENST00000612005 668 ntBASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 SPDYE8P-202ENST00000612377 668 ntBASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 AC106028.4-201ENST00000614509 607 ntBASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 AL513210.1-201ENST00000629608 234 ntBASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 AC012569.1-201ENST00000591191 1524 ntBASIC19.61■□□□□ 0.73
CTDP1Q9Y5B0 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 AC008764.6-201ENST00000595909 2069 ntBASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 RFPL4AP1-201ENST00000530883 850 ntBASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 IGHV3OR16-6-201ENST00000568775 360 ntBASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 AC027612.4-201ENST00000605371 583 ntBASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 AC026120.1-201ENST00000611536 926 ntBASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CTDP1Q9Y5B0 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms