Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS11Q9H270 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.17■□□□□ 0.34
VPS11Q9H270 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.17■□□□□ 0.34
VPS11Q9H270 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
VPS11Q9H270 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS11Q9H270 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
VPS11Q9H270 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS11Q9H270 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS11Q9H270 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS11Q9H270 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS11Q9H270 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS11Q9H270 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS11Q9H270 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS11Q9H270 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS11Q9H270 AC022616.7-201ENST00000525383 220 ntBASIC17.17■□□□□ 0.34
VPS11Q9H270 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.17■□□□□ 0.34
VPS11Q9H270 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS11Q9H270 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS11Q9H270 AC090616.6-201ENST00000582640 721 ntBASIC17.17■□□□□ 0.34
VPS11Q9H270 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.17■□□□□ 0.34
VPS11Q9H270 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
VPS11Q9H270 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.17■□□□□ 0.34
VPS11Q9H270 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.17■□□□□ 0.34
VPS11Q9H270 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.17■□□□□ 0.34
VPS11Q9H270 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS11Q9H270 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS11Q9H270 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.17■□□□□ 0.34
VPS11Q9H270 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS11Q9H270 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS11Q9H270 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS11Q9H270 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
VPS11Q9H270 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
VPS11Q9H270 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS11Q9H270 AL135999.2-201ENST00000622438 1686 ntBASIC17.16■□□□□ 0.34
VPS11Q9H270 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS11Q9H270 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.16■□□□□ 0.34
VPS11Q9H270 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.16■□□□□ 0.34
VPS11Q9H270 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.16■□□□□ 0.34
VPS11Q9H270 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS11Q9H270 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
VPS11Q9H270 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS11Q9H270 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS11Q9H270 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.16■□□□□ 0.34
VPS11Q9H270 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS11Q9H270 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
VPS11Q9H270 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS11Q9H270 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS11Q9H270 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS11Q9H270 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.16■□□□□ 0.34
VPS11Q9H270 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.16■□□□□ 0.34
VPS11Q9H270 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.16■□□□□ 0.34
VPS11Q9H270 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.16■□□□□ 0.34
VPS11Q9H270 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS11Q9H270 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS11Q9H270 STK19B-204ENST00000512515 211 ntBASIC17.16■□□□□ 0.34
VPS11Q9H270 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS11Q9H270 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.16■□□□□ 0.34
VPS11Q9H270 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS11Q9H270 AC011498.5-201ENST00000592027 486 ntBASIC17.16■□□□□ 0.34
VPS11Q9H270 AL353801.3-201ENST00000609898 542 ntBASIC17.16■□□□□ 0.34
VPS11Q9H270 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS11Q9H270 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS11Q9H270 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS11Q9H270 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS11Q9H270 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS11Q9H270 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
VPS11Q9H270 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
VPS11Q9H270 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS11Q9H270 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS11Q9H270 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS11Q9H270 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.16■□□□□ 0.34
VPS11Q9H270 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC17.15■□□□□ 0.34
VPS11Q9H270 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS11Q9H270 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS11Q9H270 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS11Q9H270 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS11Q9H270 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
VPS11Q9H270 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS11Q9H270 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS11Q9H270 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS11Q9H270 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.15■□□□□ 0.34
VPS11Q9H270 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS11Q9H270 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS11Q9H270 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.15■□□□□ 0.34
VPS11Q9H270 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS11Q9H270 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS11Q9H270 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS11Q9H270 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.15■□□□□ 0.34
VPS11Q9H270 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.15■□□□□ 0.34
VPS11Q9H270 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.15■□□□□ 0.34
VPS11Q9H270 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS11Q9H270 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
VPS11Q9H270 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS11Q9H270 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS11Q9H270 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.15■□□□□ 0.34
VPS11Q9H270 LINC01023-201ENST00000606054 436 ntBASIC17.15■□□□□ 0.34
VPS11Q9H270 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VPS11Q9H270 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.15■□□□□ 0.34
VPS11Q9H270 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS11Q9H270 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms