Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SNED1Q8TER0 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SNED1Q8TER0 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
SNED1Q8TER0 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SNED1Q8TER0 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
SNED1Q8TER0 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SNED1Q8TER0 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SNED1Q8TER0 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
SNED1Q8TER0 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC20.47■□□□□ 0.87
SNED1Q8TER0 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
SNED1Q8TER0 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SNED1Q8TER0 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SNED1Q8TER0 AC022494.1-201ENST00000466044 728 ntBASIC20.47■□□□□ 0.87
SNED1Q8TER0 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SNED1Q8TER0 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SNED1Q8TER0 WASH4P-201ENST00000564273 1246 ntBASIC20.47■□□□□ 0.87
SNED1Q8TER0 SSH2-210ENST00000582084 560 ntTSL 3 BASIC20.47■□□□□ 0.87
SNED1Q8TER0 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SNED1Q8TER0 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SNED1Q8TER0 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC20.47■□□□□ 0.87
SNED1Q8TER0 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
SNED1Q8TER0 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SNED1Q8TER0 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SNED1Q8TER0 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SNED1Q8TER0 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNED1Q8TER0 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SNED1Q8TER0 FOS-208ENST00000555686 1496 ntTSL 2 BASIC20.46■□□□□ 0.87
SNED1Q8TER0 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SNED1Q8TER0 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNED1Q8TER0 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SNED1Q8TER0 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SNED1Q8TER0 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
SNED1Q8TER0 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC20.46■□□□□ 0.87
SNED1Q8TER0 RPL37AP1-201ENST00000412502 279 ntBASIC20.46■□□□□ 0.87
SNED1Q8TER0 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SNED1Q8TER0 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
SNED1Q8TER0 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC20.46■□□□□ 0.87
SNED1Q8TER0 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC20.46■□□□□ 0.87
SNED1Q8TER0 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC20.46■□□□□ 0.87
SNED1Q8TER0 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC20.46■□□□□ 0.87
SNED1Q8TER0 HILS1-202ENST00000545329 423 ntBASIC20.46■□□□□ 0.87
SNED1Q8TER0 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC20.46■□□□□ 0.87
SNED1Q8TER0 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC20.46■□□□□ 0.87
SNED1Q8TER0 AL133215.2-201ENST00000609242 977 ntBASIC20.46■□□□□ 0.87
SNED1Q8TER0 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC20.46■□□□□ 0.87
SNED1Q8TER0 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC20.46■□□□□ 0.87
SNED1Q8TER0 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNED1Q8TER0 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC20.46■□□□□ 0.87
SNED1Q8TER0 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNED1Q8TER0 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNED1Q8TER0 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNED1Q8TER0 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SNED1Q8TER0 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNED1Q8TER0 AC133963.1-201ENST00000504166 1679 ntBASIC20.46■□□□□ 0.87
SNED1Q8TER0 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
SNED1Q8TER0 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNED1Q8TER0 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNED1Q8TER0 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC20.46■□□□□ 0.87
SNED1Q8TER0 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SNED1Q8TER0 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC20.46■□□□□ 0.87
SNED1Q8TER0 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.46■□□□□ 0.87
SNED1Q8TER0 SLC9A3P2-201ENST00000447821 2021 ntBASIC20.46■□□□□ 0.87
SNED1Q8TER0 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SNED1Q8TER0 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
SNED1Q8TER0 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
SNED1Q8TER0 HLA-H-201ENST00000383620 1096 ntBASIC20.45■□□□□ 0.86
SNED1Q8TER0 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SNED1Q8TER0 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC20.45■□□□□ 0.86
SNED1Q8TER0 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SNED1Q8TER0 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
SNED1Q8TER0 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC20.45■□□□□ 0.86
SNED1Q8TER0 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC20.45■□□□□ 0.86
SNED1Q8TER0 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SNED1Q8TER0 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC20.45■□□□□ 0.86
SNED1Q8TER0 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC20.45■□□□□ 0.86
SNED1Q8TER0 AC021097.1-201ENST00000607902 574 ntBASIC20.45■□□□□ 0.86
SNED1Q8TER0 RNA5-8SN1-201ENST00000610460 153 ntBASIC20.45■□□□□ 0.86
SNED1Q8TER0 RNA5-8SN5-202ENST00000612463 153 ntBASIC20.45■□□□□ 0.86
SNED1Q8TER0 AC003101.2-201ENST00000612557 442 ntBASIC20.45■□□□□ 0.86
SNED1Q8TER0 RNA5-8SN4-201ENST00000613359 153 ntBASIC20.45■□□□□ 0.86
SNED1Q8TER0 RNA5-8SN5-201ENST00000619471 153 ntBASIC20.45■□□□□ 0.86
SNED1Q8TER0 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
SNED1Q8TER0 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
SNED1Q8TER0 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC20.45■□□□□ 0.86
SNED1Q8TER0 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.45■□□□□ 0.86
SNED1Q8TER0 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
SNED1Q8TER0 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SNED1Q8TER0 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
SNED1Q8TER0 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.45■□□□□ 0.86
SNED1Q8TER0 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC20.45■□□□□ 0.86
SNED1Q8TER0 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SNED1Q8TER0 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SNED1Q8TER0 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC20.45■□□□□ 0.86
SNED1Q8TER0 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SNED1Q8TER0 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC20.44■□□□□ 0.86
SNED1Q8TER0 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC20.44■□□□□ 0.86
SNED1Q8TER0 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC20.44■□□□□ 0.86
SNED1Q8TER0 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SNED1Q8TER0 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC20.44■□□□□ 0.86
SNED1Q8TER0 IGHV3-71-201ENST00000523324 359 ntBASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms