Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
LMX1AQ8TE12 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 AKAP8P1-201ENST00000434743 1349 ntBASIC16.52■□□□□ 0.24
LMX1AQ8TE12 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 AC134043.2-201ENST00000624206 2238 ntBASIC16.52■□□□□ 0.24
LMX1AQ8TE12 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 HCG4-201ENST00000418983 998 ntBASIC16.52■□□□□ 0.24
LMX1AQ8TE12 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 IGHV3-62-201ENST00000520057 340 ntBASIC16.52■□□□□ 0.24
LMX1AQ8TE12 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 MIR3197-201ENST00000582241 73 ntBASIC16.52■□□□□ 0.24
LMX1AQ8TE12 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.52■□□□□ 0.24
LMX1AQ8TE12 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1AQ8TE12 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LMX1AQ8TE12 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
LMX1AQ8TE12 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.52■□□□□ 0.23
LMX1AQ8TE12 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.52■□□□□ 0.23
LMX1AQ8TE12 TOP3BP1-201ENST00000420768 1380 ntBASIC16.51■□□□□ 0.23
LMX1AQ8TE12 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 FAM8A3P-201ENST00000427218 844 ntBASIC16.51■□□□□ 0.23
LMX1AQ8TE12 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.51■□□□□ 0.23
LMX1AQ8TE12 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 SPCS2P4-201ENST00000436160 681 ntBASIC16.5■□□□□ 0.23
LMX1AQ8TE12 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.5■□□□□ 0.23
LMX1AQ8TE12 Z92544.3-201ENST00000624747 417 ntBASIC16.5■□□□□ 0.23
LMX1AQ8TE12 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms