Protein–RNA interactions for Protein: Q5VTB9

RNF220, E3 ubiquitin-protein ligase RNF220, humanhuman

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220Q5VTB9 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF220Q5VTB9 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF220Q5VTB9 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF220Q5VTB9 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
RNF220Q5VTB9 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RNF220Q5VTB9 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RNF220Q5VTB9 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
RNF220Q5VTB9 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.47■□□□□ 0.23
RNF220Q5VTB9 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RNF220Q5VTB9 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 LINC00304-203ENST00000565008 1864 ntBASIC16.46■□□□□ 0.23
RNF220Q5VTB9 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 DDX43P3-201ENST00000441064 443 ntBASIC16.46■□□□□ 0.23
RNF220Q5VTB9 LINC01023-201ENST00000606054 436 ntBASIC16.46■□□□□ 0.23
RNF220Q5VTB9 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF220Q5VTB9 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
RNF220Q5VTB9 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
RNF220Q5VTB9 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 AL009178.2-201ENST00000597278 2719 ntBASIC16.45■□□□□ 0.22
RNF220Q5VTB9 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 MIR662-201ENST00000384847 95 ntBASIC16.45■□□□□ 0.22
RNF220Q5VTB9 IGHGP-201ENST00000390555 1178 ntBASIC16.45■□□□□ 0.22
RNF220Q5VTB9 AC211429.1-201ENST00000415277 523 ntBASIC16.45■□□□□ 0.22
RNF220Q5VTB9 TSPY5P-201ENST00000426936 936 ntBASIC16.45■□□□□ 0.22
RNF220Q5VTB9 KRT18P57-201ENST00000443599 1254 ntBASIC16.45■□□□□ 0.22
RNF220Q5VTB9 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 AC092597.1-201ENST00000487352 616 ntBASIC16.45■□□□□ 0.22
RNF220Q5VTB9 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 FGF14-AS2-201ENST00000606448 1074 ntBASIC16.45■□□□□ 0.22
RNF220Q5VTB9 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 AC006011.2-201ENST00000621313 1158 ntBASIC16.45■□□□□ 0.22
RNF220Q5VTB9 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 KRT8P47-201ENST00000604727 1398 ntBASIC16.45■□□□□ 0.22
RNF220Q5VTB9 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 AC078925.2-201ENST00000624013 1973 ntBASIC16.45■□□□□ 0.22
RNF220Q5VTB9 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF220Q5VTB9 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms