Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 NUDT16P1-203ENST00000513809 620 ntBASIC12.84□□□□□ -0.35
FOXA3P55318 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC12.84□□□□□ -0.35
FOXA3P55318 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC12.84□□□□□ -0.35
FOXA3P55318 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
FOXA3P55318 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
FOXA3P55318 MTHFR-217ENST00000641820 1569 ntBASIC12.84□□□□□ -0.35
FOXA3P55318 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
FOXA3P55318 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC12.84□□□□□ -0.35
FOXA3P55318 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA3P55318 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
FOXA3P55318 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
FOXA3P55318 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
FOXA3P55318 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC12.83□□□□□ -0.35
FOXA3P55318 AC104640.1-201ENST00000562617 2109 ntBASIC12.83□□□□□ -0.35
FOXA3P55318 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
FOXA3P55318 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC12.83□□□□□ -0.35
FOXA3P55318 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
FOXA3P55318 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC12.83□□□□□ -0.36
FOXA3P55318 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC12.83□□□□□ -0.36
FOXA3P55318 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC12.83□□□□□ -0.36
FOXA3P55318 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC12.83□□□□□ -0.36
FOXA3P55318 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC12.83□□□□□ -0.36
FOXA3P55318 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC12.83□□□□□ -0.36
FOXA3P55318 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC12.83□□□□□ -0.36
FOXA3P55318 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC12.83□□□□□ -0.36
FOXA3P55318 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
FOXA3P55318 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC12.83□□□□□ -0.36
FOXA3P55318 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC12.83□□□□□ -0.36
FOXA3P55318 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC12.83□□□□□ -0.36
FOXA3P55318 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC12.83□□□□□ -0.36
FOXA3P55318 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC12.83□□□□□ -0.36
FOXA3P55318 AP005242.2-201ENST00000580065 1175 ntBASIC12.83□□□□□ -0.36
FOXA3P55318 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
FOXA3P55318 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
FOXA3P55318 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
FOXA3P55318 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
FOXA3P55318 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC12.83□□□□□ -0.36
FOXA3P55318 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC12.83□□□□□ -0.36
FOXA3P55318 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
FOXA3P55318 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
FOXA3P55318 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
FOXA3P55318 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.36
FOXA3P55318 PBK-203ENST00000522944 1499 ntTSL 2 BASIC12.83□□□□□ -0.36
FOXA3P55318 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC12.83□□□□□ -0.36
FOXA3P55318 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
FOXA3P55318 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC12.83□□□□□ -0.36
FOXA3P55318 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA3P55318 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
FOXA3P55318 AC092384.3-202ENST00000564646 2873 ntBASIC12.83□□□□□ -0.36
FOXA3P55318 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
FOXA3P55318 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC12.82□□□□□ -0.36
FOXA3P55318 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC12.82□□□□□ -0.36
FOXA3P55318 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC12.82□□□□□ -0.36
FOXA3P55318 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC12.82□□□□□ -0.36
FOXA3P55318 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA3P55318 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC12.82□□□□□ -0.36
FOXA3P55318 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
FOXA3P55318 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms