Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 LINC00167-201ENST00000530583 1419 ntBASIC13.98□□□□□ -0.17
CDX1P47902 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC13.98□□□□□ -0.17
CDX1P47902 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CDX1P47902 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CDX1P47902 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
CDX1P47902 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 REXO1L9P-201ENST00000604264 2108 ntBASIC13.97□□□□□ -0.17
CDX1P47902 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CDX1P47902 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CDX1P47902 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC13.97□□□□□ -0.17
CDX1P47902 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC13.97□□□□□ -0.17
CDX1P47902 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CDX1P47902 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC13.97□□□□□ -0.17
CDX1P47902 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CDX1P47902 NSUN5P1-202ENST00000421140 1535 ntBASIC13.97□□□□□ -0.17
CDX1P47902 NSUN5P2-203ENST00000457352 1529 ntBASIC13.97□□□□□ -0.17
CDX1P47902 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
CDX1P47902 MTCL1P1-201ENST00000446207 792 ntBASIC13.97□□□□□ -0.17
CDX1P47902 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC13.97□□□□□ -0.17
CDX1P47902 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC13.97□□□□□ -0.17
CDX1P47902 CDV3-207ENST00000508481 661 ntTSL 3 BASIC13.97□□□□□ -0.17
CDX1P47902 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC13.97□□□□□ -0.17
CDX1P47902 TBCB-205ENST00000585746 875 ntTSL 3 BASIC13.97□□□□□ -0.17
CDX1P47902 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC13.97□□□□□ -0.17
CDX1P47902 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 AC099336.1-202ENST00000602961 463 ntBASIC13.97□□□□□ -0.17
CDX1P47902 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC13.97□□□□□ -0.17
CDX1P47902 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
CDX1P47902 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CDX1P47902 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CDX1P47902 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
CDX1P47902 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC13.96□□□□□ -0.17
CDX1P47902 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC13.96□□□□□ -0.17
CDX1P47902 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.17
CDX1P47902 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC13.96□□□□□ -0.17
CDX1P47902 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 AC104640.1-201ENST00000562617 2109 ntBASIC13.96□□□□□ -0.17
CDX1P47902 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC13.96□□□□□ -0.17
CDX1P47902 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC13.96□□□□□ -0.17
CDX1P47902 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC13.96□□□□□ -0.17
CDX1P47902 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC13.96□□□□□ -0.17
CDX1P47902 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
CDX1P47902 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC13.96□□□□□ -0.17
CDX1P47902 AL845331.1-201ENST00000424978 1190 ntBASIC13.96□□□□□ -0.17
CDX1P47902 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC13.96□□□□□ -0.17
CDX1P47902 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC13.96□□□□□ -0.17
CDX1P47902 KRT16P4-201ENST00000453883 522 ntBASIC13.96□□□□□ -0.17
CDX1P47902 FOSL1P1-201ENST00000511041 816 ntBASIC13.96□□□□□ -0.17
CDX1P47902 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CDX1P47902 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC13.96□□□□□ -0.17
CDX1P47902 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC13.96□□□□□ -0.17
CDX1P47902 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms