Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
COL3A1P02461 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
COL3A1P02461 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL3A1P02461 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC22.26■■□□□ 1.15
COL3A1P02461 CD81-202ENST00000381036 880 ntTSL 3 BASIC22.26■■□□□ 1.15
COL3A1P02461 AL671277.1-201ENST00000429656 993 ntBASIC22.26■■□□□ 1.15
COL3A1P02461 WDR53-204ENST00000433160 887 ntTSL 5 BASIC22.26■■□□□ 1.15
COL3A1P02461 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC22.26■■□□□ 1.15
COL3A1P02461 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC22.26■■□□□ 1.15
COL3A1P02461 AP002490.2-201ENST00000524791 560 ntBASIC22.26■■□□□ 1.15
COL3A1P02461 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
COL3A1P02461 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
COL3A1P02461 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC22.26■■□□□ 1.15
COL3A1P02461 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC22.26■■□□□ 1.15
COL3A1P02461 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COL3A1P02461 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
COL3A1P02461 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC22.25■■□□□ 1.15
COL3A1P02461 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL3A1P02461 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC22.25■■□□□ 1.15
COL3A1P02461 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL3A1P02461 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC22.25■■□□□ 1.15
COL3A1P02461 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL3A1P02461 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL3A1P02461 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC22.25■■□□□ 1.15
COL3A1P02461 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL3A1P02461 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC22.25■■□□□ 1.15
COL3A1P02461 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL3A1P02461 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC22.25■■□□□ 1.15
COL3A1P02461 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC22.25■■□□□ 1.15
COL3A1P02461 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL3A1P02461 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC22.25■■□□□ 1.15
COL3A1P02461 CCND1-203ENST00000536559 553 ntTSL 3 BASIC22.25■■□□□ 1.15
COL3A1P02461 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC22.25■■□□□ 1.15
COL3A1P02461 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
COL3A1P02461 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL3A1P02461 HLA-A-202ENST00000376806 1854 ntBASIC22.25■■□□□ 1.15
COL3A1P02461 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL3A1P02461 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
COL3A1P02461 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC22.25■■□□□ 1.15
COL3A1P02461 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC22.25■■□□□ 1.15
COL3A1P02461 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC22.25■■□□□ 1.15
COL3A1P02461 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL3A1P02461 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC22.25■■□□□ 1.15
COL3A1P02461 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC22.24■■□□□ 1.15
COL3A1P02461 AL031731.1-201ENST00000642131 2094 ntBASIC22.24■■□□□ 1.15
COL3A1P02461 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC22.24■■□□□ 1.15
COL3A1P02461 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL3A1P02461 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
COL3A1P02461 LBH-203ENST00000404397 543 ntTSL 4 BASIC22.24■■□□□ 1.15
COL3A1P02461 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC22.24■■□□□ 1.15
COL3A1P02461 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC22.24■■□□□ 1.15
COL3A1P02461 FAM86C2P-203ENST00000528684 1004 ntBASIC22.24■■□□□ 1.15
COL3A1P02461 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL3A1P02461 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL3A1P02461 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC22.24■■□□□ 1.15
COL3A1P02461 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL3A1P02461 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL3A1P02461 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC22.24■■□□□ 1.15
COL3A1P02461 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL3A1P02461 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC22.24■■□□□ 1.15
COL3A1P02461 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC22.24■■□□□ 1.15
COL3A1P02461 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL3A1P02461 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
COL3A1P02461 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL3A1P02461 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC22.23■■□□□ 1.15
COL3A1P02461 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC22.23■■□□□ 1.15
COL3A1P02461 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL3A1P02461 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC22.23■■□□□ 1.15
COL3A1P02461 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC22.23■■□□□ 1.15
COL3A1P02461 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL3A1P02461 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL3A1P02461 CD99-202ENST00000381180 530 ntTSL 2 BASIC22.23■■□□□ 1.15
COL3A1P02461 PTMS-202ENST00000389462 773 ntTSL 2 BASIC22.23■■□□□ 1.15
COL3A1P02461 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC22.23■■□□□ 1.15
COL3A1P02461 KRT18P32-201ENST00000424695 1287 ntBASIC22.23■■□□□ 1.15
COL3A1P02461 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC22.23■■□□□ 1.15
COL3A1P02461 GATB-205ENST00000508611 605 ntTSL 2 BASIC22.23■■□□□ 1.15
COL3A1P02461 SNHG9-202ENST00000564014 471 ntBASIC22.23■■□□□ 1.15
COL3A1P02461 AC073389.1-201ENST00000595595 795 ntBASIC22.23■■□□□ 1.15
COL3A1P02461 AC004835.2-201ENST00000603762 682 ntBASIC22.23■■□□□ 1.15
COL3A1P02461 AC093028.1-201ENST00000622998 982 ntBASIC22.23■■□□□ 1.15
COL3A1P02461 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC22.23■■□□□ 1.15
COL3A1P02461 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
COL3A1P02461 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC22.23■■□□□ 1.15
COL3A1P02461 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
COL3A1P02461 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL3A1P02461 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL3A1P02461 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC22.23■■□□□ 1.15
COL3A1P02461 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
COL3A1P02461 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC22.23■■□□□ 1.15
COL3A1P02461 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL3A1P02461 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC22.23■■□□□ 1.15
COL3A1P02461 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC22.22■■□□□ 1.15
COL3A1P02461 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
COL3A1P02461 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL3A1P02461 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL3A1P02461 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
COL3A1P02461 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
COL3A1P02461 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
COL3A1P02461 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms