Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.52■□□□□ 0.23
LDLRP01130 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
LDLRP01130 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LDLRP01130 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
LDLRP01130 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.51■□□□□ 0.23
LDLRP01130 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.51■□□□□ 0.23
LDLRP01130 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.51■□□□□ 0.23
LDLRP01130 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.51■□□□□ 0.23
LDLRP01130 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
LDLRP01130 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LDLRP01130 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
LDLRP01130 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.51■□□□□ 0.23
LDLRP01130 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.51■□□□□ 0.23
LDLRP01130 KRT18P67-201ENST00000432816 1264 ntBASIC16.51■□□□□ 0.23
LDLRP01130 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.51■□□□□ 0.23
LDLRP01130 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.51■□□□□ 0.23
LDLRP01130 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.51■□□□□ 0.23
LDLRP01130 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.51■□□□□ 0.23
LDLRP01130 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.51■□□□□ 0.23
LDLRP01130 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.51■□□□□ 0.23
LDLRP01130 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.51■□□□□ 0.23
LDLRP01130 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.51■□□□□ 0.23
LDLRP01130 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.51■□□□□ 0.23
LDLRP01130 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LDLRP01130 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.51■□□□□ 0.23
LDLRP01130 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.51■□□□□ 0.23
LDLRP01130 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
LDLRP01130 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
LDLRP01130 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LDLRP01130 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LDLRP01130 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.51■□□□□ 0.23
LDLRP01130 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 AC011270.2-201ENST00000624293 2550 ntBASIC16.5■□□□□ 0.23
LDLRP01130 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.5■□□□□ 0.23
LDLRP01130 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
LDLRP01130 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.5■□□□□ 0.23
LDLRP01130 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.5■□□□□ 0.23
LDLRP01130 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
LDLRP01130 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.5■□□□□ 0.23
LDLRP01130 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.5■□□□□ 0.23
LDLRP01130 NUS1P2-201ENST00000417358 873 ntBASIC16.5■□□□□ 0.23
LDLRP01130 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.5■□□□□ 0.23
LDLRP01130 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.5■□□□□ 0.23
LDLRP01130 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.5■□□□□ 0.23
LDLRP01130 TERC-201ENST00000602385 541 ntBASIC16.5■□□□□ 0.23
LDLRP01130 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.5■□□□□ 0.23
LDLRP01130 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.5■□□□□ 0.23
LDLRP01130 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.5■□□□□ 0.23
LDLRP01130 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
LDLRP01130 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.5■□□□□ 0.23
LDLRP01130 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
LDLRP01130 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.5■□□□□ 0.23
LDLRP01130 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 NSUN5P1-202ENST00000421140 1535 ntBASIC16.5■□□□□ 0.23
LDLRP01130 NSUN5P2-203ENST00000457352 1529 ntBASIC16.5■□□□□ 0.23
LDLRP01130 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.5■□□□□ 0.23
LDLRP01130 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.5■□□□□ 0.23
LDLRP01130 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LDLRP01130 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms