Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.26■□□□□ 0.35
HOXC11O43248 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
HOXC11O43248 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.25■□□□□ 0.35
HOXC11O43248 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
HOXC11O43248 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.25■□□□□ 0.35
HOXC11O43248 AC131009.4-201ENST00000624048 1740 ntBASIC17.25■□□□□ 0.35
HOXC11O43248 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.25■□□□□ 0.35
HOXC11O43248 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.25■□□□□ 0.35
HOXC11O43248 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.25■□□□□ 0.35
HOXC11O43248 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.25■□□□□ 0.35
HOXC11O43248 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 MIR770-201ENST00000390219 98 ntBASIC17.25■□□□□ 0.35
HOXC11O43248 PMS2P4-201ENST00000412466 1052 ntBASIC17.25■□□□□ 0.35
HOXC11O43248 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.25■□□□□ 0.35
HOXC11O43248 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC17.25■□□□□ 0.35
HOXC11O43248 KRT18P32-201ENST00000424695 1287 ntBASIC17.25■□□□□ 0.35
HOXC11O43248 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.25■□□□□ 0.35
HOXC11O43248 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.25■□□□□ 0.35
HOXC11O43248 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 KRT8P23-201ENST00000560090 1207 ntBASIC17.25■□□□□ 0.35
HOXC11O43248 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.25■□□□□ 0.35
HOXC11O43248 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17.25■□□□□ 0.35
HOXC11O43248 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
HOXC11O43248 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
HOXC11O43248 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.25■□□□□ 0.35
HOXC11O43248 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.25■□□□□ 0.35
HOXC11O43248 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.25■□□□□ 0.35
HOXC11O43248 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HOXC11O43248 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.25■□□□□ 0.35
HOXC11O43248 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.24■□□□□ 0.35
HOXC11O43248 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HOXC11O43248 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC11O43248 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC11O43248 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC11O43248 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC11O43248 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC11O43248 WASH6P-202ENST00000359512 1437 ntBASIC17.24■□□□□ 0.35
HOXC11O43248 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
HOXC11O43248 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.24■□□□□ 0.35
HOXC11O43248 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HOXC11O43248 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC11O43248 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC11O43248 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC11O43248 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC11O43248 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.24■□□□□ 0.35
HOXC11O43248 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.24■□□□□ 0.35
HOXC11O43248 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.24■□□□□ 0.35
HOXC11O43248 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.24■□□□□ 0.35
HOXC11O43248 AL512356.2-201ENST00000546955 174 ntBASIC17.24■□□□□ 0.35
HOXC11O43248 LINC01225-203ENST00000563550 1244 ntBASIC17.24■□□□□ 0.35
HOXC11O43248 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.24■□□□□ 0.35
HOXC11O43248 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.24■□□□□ 0.35
HOXC11O43248 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HOXC11O43248 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.24■□□□□ 0.35
HOXC11O43248 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.24■□□□□ 0.35
HOXC11O43248 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.24■□□□□ 0.35
HOXC11O43248 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.24■□□□□ 0.35
HOXC11O43248 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.24■□□□□ 0.35
HOXC11O43248 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.24■□□□□ 0.35
HOXC11O43248 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HOXC11O43248 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
HOXC11O43248 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.24■□□□□ 0.35
HOXC11O43248 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HOXC11O43248 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.24■□□□□ 0.35
HOXC11O43248 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HOXC11O43248 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HOXC11O43248 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
HOXC11O43248 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC11O43248 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.24■□□□□ 0.35
HOXC11O43248 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.24■□□□□ 0.35
HOXC11O43248 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC11O43248 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HOXC11O43248 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.24■□□□□ 0.35
HOXC11O43248 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXC11O43248 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC11O43248 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC11O43248 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.23■□□□□ 0.35
HOXC11O43248 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXC11O43248 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.23■□□□□ 0.35
HOXC11O43248 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC11O43248 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HOXC11O43248 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms