Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC19.38■□□□□ 0.69
ERCC4Q92889 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ERCC4Q92889 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ERCC4Q92889 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ERCC4Q92889 DAP-202ENST00000432074 1048 ntTSL 2 BASIC19.38■□□□□ 0.69
ERCC4Q92889 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ERCC4Q92889 FRMD8P1-201ENST00000440433 1524 ntBASIC19.38■□□□□ 0.69
ERCC4Q92889 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC19.38■□□□□ 0.69
ERCC4Q92889 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC19.38■□□□□ 0.69
ERCC4Q92889 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.38■□□□□ 0.69
ERCC4Q92889 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.38■□□□□ 0.69
ERCC4Q92889 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
ERCC4Q92889 AC111152.3-201ENST00000569699 673 ntBASIC19.38■□□□□ 0.69
ERCC4Q92889 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.38■□□□□ 0.69
ERCC4Q92889 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC19.38■□□□□ 0.69
ERCC4Q92889 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC19.38■□□□□ 0.69
ERCC4Q92889 AC009336.1-201ENST00000608941 1553 ntBASIC19.38■□□□□ 0.69
ERCC4Q92889 AC016734.2-201ENST00000624325 1377 ntBASIC19.38■□□□□ 0.69
ERCC4Q92889 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ERCC4Q92889 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC19.38■□□□□ 0.69
ERCC4Q92889 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ERCC4Q92889 AC011270.2-201ENST00000624293 2550 ntBASIC19.38■□□□□ 0.69
ERCC4Q92889 GCK-202ENST00000345378 2421 ntTSL 2 BASIC19.37■□□□□ 0.69
ERCC4Q92889 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.37■□□□□ 0.69
ERCC4Q92889 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ERCC4Q92889 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC19.37■□□□□ 0.69
ERCC4Q92889 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ERCC4Q92889 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
ERCC4Q92889 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ERCC4Q92889 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
ERCC4Q92889 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.37■□□□□ 0.69
ERCC4Q92889 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
ERCC4Q92889 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ERCC4Q92889 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ERCC4Q92889 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ERCC4Q92889 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ERCC4Q92889 AC005332.1-201ENST00000577698 1310 ntBASIC19.37■□□□□ 0.69
ERCC4Q92889 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ERCC4Q92889 MIR1224-201ENST00000408193 85 ntBASIC19.37■□□□□ 0.69
ERCC4Q92889 AC103564.2-201ENST00000432853 1299 ntBASIC19.37■□□□□ 0.69
ERCC4Q92889 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.37■□□□□ 0.69
ERCC4Q92889 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.37■□□□□ 0.69
ERCC4Q92889 STK19B-204ENST00000512515 211 ntBASIC19.37■□□□□ 0.69
ERCC4Q92889 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC19.37■□□□□ 0.69
ERCC4Q92889 NTF6B-201ENST00000591913 560 ntBASIC19.37■□□□□ 0.69
ERCC4Q92889 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
ERCC4Q92889 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC19.37■□□□□ 0.69
ERCC4Q92889 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.37■□□□□ 0.69
ERCC4Q92889 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ERCC4Q92889 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
ERCC4Q92889 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
ERCC4Q92889 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ERCC4Q92889 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ERCC4Q92889 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ERCC4Q92889 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ERCC4Q92889 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
ERCC4Q92889 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
ERCC4Q92889 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ERCC4Q92889 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ERCC4Q92889 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
ERCC4Q92889 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
ERCC4Q92889 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
ERCC4Q92889 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
ERCC4Q92889 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ERCC4Q92889 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.36■□□□□ 0.69
ERCC4Q92889 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ERCC4Q92889 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ERCC4Q92889 AC006449.5-201ENST00000610658 2098 ntBASIC19.36■□□□□ 0.69
ERCC4Q92889 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ERCC4Q92889 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.36■□□□□ 0.69
ERCC4Q92889 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ERCC4Q92889 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ERCC4Q92889 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC19.36■□□□□ 0.69
ERCC4Q92889 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
ERCC4Q92889 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
ERCC4Q92889 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
ERCC4Q92889 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
ERCC4Q92889 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19.36■□□□□ 0.69
ERCC4Q92889 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC19.36■□□□□ 0.69
ERCC4Q92889 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ERCC4Q92889 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
ERCC4Q92889 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.36■□□□□ 0.69
ERCC4Q92889 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ERCC4Q92889 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC19.35■□□□□ 0.69
ERCC4Q92889 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
ERCC4Q92889 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC19.35■□□□□ 0.69
ERCC4Q92889 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ERCC4Q92889 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ERCC4Q92889 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
ERCC4Q92889 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC19.35■□□□□ 0.69
ERCC4Q92889 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
ERCC4Q92889 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ERCC4Q92889 BET1L-202ENST00000332865 533 ntTSL 5 BASIC19.35■□□□□ 0.69
ERCC4Q92889 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC19.35■□□□□ 0.69
ERCC4Q92889 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
ERCC4Q92889 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.35■□□□□ 0.69
ERCC4Q92889 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
ERCC4Q92889 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
ERCC4Q92889 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
ERCC4Q92889 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms