Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 AL662844.4-201ENST00000606367 2838 ntBASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 Metazoa_SRP.96-201ENST00000621315 318 ntBASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 AC006449.5-201ENST00000610658 2098 ntBASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 MIR662-201ENST00000384847 95 ntBASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 KRT18P48-201ENST00000434763 852 ntBASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 BCL10-202ENST00000620248 774 ntTSL 5 BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
DEPDC4Q8N2C3 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC15.92■□□□□ 0.14
DEPDC4Q8N2C3 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms