Protein–RNA interactions for Protein: P62701

RPS4X, 40S ribosomal protein S4, X isoform, humanhuman

Known RBP Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS4XP62701 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
RPS4XP62701 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.41■□□□□ 0.06
RPS4XP62701 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RPS4XP62701 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RPS4XP62701 AP002414.1-201ENST00000391405 1147 ntBASIC15.41■□□□□ 0.06
RPS4XP62701 HIST2H3DP1-201ENST00000401004 416 ntBASIC15.41■□□□□ 0.06
RPS4XP62701 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RPS4XP62701 AL031284.1-201ENST00000419297 478 ntBASIC15.41■□□□□ 0.06
RPS4XP62701 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
RPS4XP62701 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC15.41■□□□□ 0.06
RPS4XP62701 AC073648.2-201ENST00000510116 352 ntBASIC15.41■□□□□ 0.06
RPS4XP62701 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC15.41■□□□□ 0.06
RPS4XP62701 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
RPS4XP62701 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.41■□□□□ 0.06
RPS4XP62701 AC006538.3-201ENST00000612495 578 ntBASIC15.41■□□□□ 0.06
RPS4XP62701 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC15.41■□□□□ 0.06
RPS4XP62701 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RPS4XP62701 AC117500.6-201ENST00000624871 588 ntBASIC15.41■□□□□ 0.06
RPS4XP62701 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RPS4XP62701 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
RPS4XP62701 AC097637.2-201ENST00000624096 1997 ntBASIC15.41■□□□□ 0.06
RPS4XP62701 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
RPS4XP62701 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
RPS4XP62701 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RPS4XP62701 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.41■□□□□ 0.06
RPS4XP62701 IL9RP2-201ENST00000423948 1312 ntBASIC15.41■□□□□ 0.06
RPS4XP62701 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.41■□□□□ 0.06
RPS4XP62701 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
RPS4XP62701 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RPS4XP62701 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
RPS4XP62701 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
RPS4XP62701 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RPS4XP62701 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
RPS4XP62701 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
RPS4XP62701 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RPS4XP62701 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RPS4XP62701 MED16-201ENST00000269814 1199 ntTSL 5 BASIC15.4■□□□□ 0.06
RPS4XP62701 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RPS4XP62701 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
RPS4XP62701 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RPS4XP62701 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RPS4XP62701 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC15.4■□□□□ 0.06
RPS4XP62701 AP002490.2-201ENST00000524791 560 ntBASIC15.4■□□□□ 0.06
RPS4XP62701 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC15.4■□□□□ 0.06
RPS4XP62701 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC15.4■□□□□ 0.06
RPS4XP62701 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC15.4■□□□□ 0.06
RPS4XP62701 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.4■□□□□ 0.06
RPS4XP62701 COPE-211ENST00000600932 1144 ntTSL 5 BASIC15.4■□□□□ 0.06
RPS4XP62701 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.4■□□□□ 0.06
RPS4XP62701 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
RPS4XP62701 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
RPS4XP62701 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RPS4XP62701 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
RPS4XP62701 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
RPS4XP62701 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RPS4XP62701 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC15.4■□□□□ 0.06
RPS4XP62701 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RPS4XP62701 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
RPS4XP62701 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC15.4■□□□□ 0.06
RPS4XP62701 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RPS4XP62701 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RPS4XP62701 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RPS4XP62701 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RPS4XP62701 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RPS4XP62701 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.39■□□□□ 0.05
RPS4XP62701 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
RPS4XP62701 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.39■□□□□ 0.05
RPS4XP62701 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RPS4XP62701 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.39■□□□□ 0.05
RPS4XP62701 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.39■□□□□ 0.05
RPS4XP62701 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.39■□□□□ 0.05
RPS4XP62701 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC15.39■□□□□ 0.05
RPS4XP62701 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
RPS4XP62701 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.39■□□□□ 0.05
RPS4XP62701 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
RPS4XP62701 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RPS4XP62701 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RPS4XP62701 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RPS4XP62701 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.39■□□□□ 0.05
RPS4XP62701 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
RPS4XP62701 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
RPS4XP62701 RBM17P3-201ENST00000417687 1192 ntBASIC15.39■□□□□ 0.05
RPS4XP62701 LINC00982-205ENST00000420957 435 ntBASIC15.39■□□□□ 0.05
RPS4XP62701 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC15.39■□□□□ 0.05
RPS4XP62701 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RPS4XP62701 SCARNA2-201ENST00000458748 420 ntBASIC15.39■□□□□ 0.05
RPS4XP62701 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC15.39■□□□□ 0.05
RPS4XP62701 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.39■□□□□ 0.05
RPS4XP62701 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.39■□□□□ 0.05
RPS4XP62701 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
RPS4XP62701 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RPS4XP62701 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.39■□□□□ 0.05
RPS4XP62701 AP001269.4-201ENST00000609611 512 ntBASIC15.39■□□□□ 0.05
RPS4XP62701 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
RPS4XP62701 AF228730.7-201ENST00000641842 219 ntBASIC15.39■□□□□ 0.05
RPS4XP62701 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
RPS4XP62701 AP005117.1-201ENST00000584346 1413 ntBASIC15.39■□□□□ 0.05
RPS4XP62701 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RPS4XP62701 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RPS4XP62701 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms