Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SRP54P61011 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SRP54P61011 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.82■□□□□ 0.28
SRP54P61011 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
SRP54P61011 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.82■□□□□ 0.28
SRP54P61011 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.82■□□□□ 0.28
SRP54P61011 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.82■□□□□ 0.28
SRP54P61011 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SRP54P61011 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SRP54P61011 ACTL9-202ENST00000612068 1252 ntBASIC16.82■□□□□ 0.28
SRP54P61011 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SRP54P61011 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
SRP54P61011 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.82■□□□□ 0.28
SRP54P61011 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SRP54P61011 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SRP54P61011 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SRP54P61011 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.82■□□□□ 0.28
SRP54P61011 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SRP54P61011 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SRP54P61011 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SRP54P61011 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
SRP54P61011 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.82■□□□□ 0.28
SRP54P61011 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.81■□□□□ 0.28
SRP54P61011 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SRP54P61011 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SRP54P61011 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SRP54P61011 AC134043.2-201ENST00000624206 2238 ntBASIC16.81■□□□□ 0.28
SRP54P61011 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.81■□□□□ 0.28
SRP54P61011 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SRP54P61011 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.81■□□□□ 0.28
SRP54P61011 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
SRP54P61011 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.81■□□□□ 0.28
SRP54P61011 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.81■□□□□ 0.28
SRP54P61011 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SRP54P61011 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.81■□□□□ 0.28
SRP54P61011 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.81■□□□□ 0.28
SRP54P61011 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SRP54P61011 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.81■□□□□ 0.28
SRP54P61011 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SRP54P61011 DNAJB3-202ENST00000449667 1266 ntBASIC16.81■□□□□ 0.28
SRP54P61011 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.81■□□□□ 0.28
SRP54P61011 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
SRP54P61011 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.81■□□□□ 0.28
SRP54P61011 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.81■□□□□ 0.28
SRP54P61011 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.81■□□□□ 0.28
SRP54P61011 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.81■□□□□ 0.28
SRP54P61011 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SRP54P61011 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.81■□□□□ 0.28
SRP54P61011 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SRP54P61011 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.81■□□□□ 0.28
SRP54P61011 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SRP54P61011 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.8■□□□□ 0.28
SRP54P61011 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.8■□□□□ 0.28
SRP54P61011 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
SRP54P61011 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.8■□□□□ 0.28
SRP54P61011 AP006288.1-201ENST00000446065 395 ntBASIC16.8■□□□□ 0.28
SRP54P61011 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.8■□□□□ 0.28
SRP54P61011 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.8■□□□□ 0.28
SRP54P61011 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
SRP54P61011 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
SRP54P61011 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.8■□□□□ 0.28
SRP54P61011 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.8■□□□□ 0.28
SRP54P61011 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.8■□□□□ 0.28
SRP54P61011 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.8■□□□□ 0.28
SRP54P61011 AL596442.2-201ENST00000610240 980 ntBASIC16.8■□□□□ 0.28
SRP54P61011 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.8■□□□□ 0.28
SRP54P61011 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.8■□□□□ 0.28
SRP54P61011 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.8■□□□□ 0.28
SRP54P61011 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.8■□□□□ 0.28
SRP54P61011 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.8■□□□□ 0.28
SRP54P61011 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.8■□□□□ 0.28
SRP54P61011 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SRP54P61011 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.79■□□□□ 0.28
SRP54P61011 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SRP54P61011 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms