Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
RFX3P48380 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
RFX3P48380 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.07■□□□□ 0.16
RFX3P48380 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.07■□□□□ 0.16
RFX3P48380 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.07■□□□□ 0.16
RFX3P48380 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.07■□□□□ 0.16
RFX3P48380 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 TSPY19P-201ENST00000418461 509 ntBASIC16.07■□□□□ 0.16
RFX3P48380 AL020989.1-201ENST00000422979 469 ntBASIC16.07■□□□□ 0.16
RFX3P48380 TSPY18P-201ENST00000441642 509 ntBASIC16.07■□□□□ 0.16
RFX3P48380 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.07■□□□□ 0.16
RFX3P48380 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.07■□□□□ 0.16
RFX3P48380 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.07■□□□□ 0.16
RFX3P48380 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.07■□□□□ 0.16
RFX3P48380 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 AL135999.2-201ENST00000622438 1686 ntBASIC16.07■□□□□ 0.16
RFX3P48380 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
RFX3P48380 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.07■□□□□ 0.16
RFX3P48380 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.07■□□□□ 0.16
RFX3P48380 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFX3P48380 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.06■□□□□ 0.16
RFX3P48380 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.06■□□□□ 0.16
RFX3P48380 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.06■□□□□ 0.16
RFX3P48380 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 AC093525.9-201ENST00000624961 1746 ntBASIC16.06■□□□□ 0.16
RFX3P48380 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.06■□□□□ 0.16
RFX3P48380 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.06■□□□□ 0.16
RFX3P48380 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.06■□□□□ 0.16
RFX3P48380 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.06■□□□□ 0.16
RFX3P48380 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.06■□□□□ 0.16
RFX3P48380 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.06■□□□□ 0.16
RFX3P48380 SIGLEC30P-201ENST00000455569 941 ntBASIC16.06■□□□□ 0.16
RFX3P48380 BX005266.1-201ENST00000473402 457 ntBASIC16.06■□□□□ 0.16
RFX3P48380 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.06■□□□□ 0.16
RFX3P48380 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.06■□□□□ 0.16
RFX3P48380 MTDHP3-201ENST00000594186 672 ntBASIC16.06■□□□□ 0.16
RFX3P48380 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.06■□□□□ 0.16
RFX3P48380 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.06■□□□□ 0.16
RFX3P48380 IFNL4P1-201ENST00000607083 540 ntBASIC16.06■□□□□ 0.16
RFX3P48380 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.06■□□□□ 0.16
RFX3P48380 AP000867.4-201ENST00000641616 219 ntBASIC16.06■□□□□ 0.16
RFX3P48380 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC16.06■□□□□ 0.16
RFX3P48380 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
RFX3P48380 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.06■□□□□ 0.16
RFX3P48380 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
RFX3P48380 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
RFX3P48380 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.06■□□□□ 0.16
RFX3P48380 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFX3P48380 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
RFX3P48380 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFX3P48380 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
RFX3P48380 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
RFX3P48380 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
RFX3P48380 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.05■□□□□ 0.16
RFX3P48380 NKILA-202ENST00000614771 2598 ntBASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms