Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
HADHAP40939 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
HADHAP40939 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HADHAP40939 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
HADHAP40939 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.28■□□□□ 0.36
HADHAP40939 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.28■□□□□ 0.36
HADHAP40939 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
HADHAP40939 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HADHAP40939 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
HADHAP40939 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.28■□□□□ 0.36
HADHAP40939 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.28■□□□□ 0.36
HADHAP40939 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.28■□□□□ 0.36
HADHAP40939 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.28■□□□□ 0.36
HADHAP40939 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.28■□□□□ 0.36
HADHAP40939 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.28■□□□□ 0.36
HADHAP40939 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.28■□□□□ 0.36
HADHAP40939 AC005915.1-201ENST00000624912 2018 ntBASIC17.28■□□□□ 0.36
HADHAP40939 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.28■□□□□ 0.36
HADHAP40939 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.28■□□□□ 0.36
HADHAP40939 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HADHAP40939 AC097637.2-201ENST00000624096 1997 ntBASIC17.28■□□□□ 0.36
HADHAP40939 EGFEM1P-202ENST00000431685 1563 ntBASIC17.28■□□□□ 0.36
HADHAP40939 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.28■□□□□ 0.36
HADHAP40939 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HADHAP40939 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
HADHAP40939 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.27■□□□□ 0.36
HADHAP40939 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HADHAP40939 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.27■□□□□ 0.36
HADHAP40939 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.27■□□□□ 0.36
HADHAP40939 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.27■□□□□ 0.36
HADHAP40939 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
HADHAP40939 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.27■□□□□ 0.36
HADHAP40939 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HADHAP40939 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HADHAP40939 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HADHAP40939 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HADHAP40939 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.36
HADHAP40939 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HADHAP40939 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.27■□□□□ 0.36
HADHAP40939 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.27■□□□□ 0.36
HADHAP40939 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
HADHAP40939 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HADHAP40939 NKAPP1-205ENST00000585790 367 ntBASIC17.27■□□□□ 0.36
HADHAP40939 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.27■□□□□ 0.36
HADHAP40939 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.27■□□□□ 0.36
HADHAP40939 AL121894.2-201ENST00000602977 491 ntBASIC17.27■□□□□ 0.36
HADHAP40939 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HADHAP40939 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
HADHAP40939 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
HADHAP40939 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HADHAP40939 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
HADHAP40939 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.27■□□□□ 0.35
HADHAP40939 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
HADHAP40939 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.27■□□□□ 0.35
HADHAP40939 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.27■□□□□ 0.35
HADHAP40939 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
HADHAP40939 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HADHAP40939 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
HADHAP40939 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
HADHAP40939 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HADHAP40939 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
HADHAP40939 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HADHAP40939 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HADHAP40939 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
HADHAP40939 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HADHAP40939 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HADHAP40939 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HADHAP40939 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HADHAP40939 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
HADHAP40939 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HADHAP40939 AC092053.1-201ENST00000605787 1936 ntBASIC17.26■□□□□ 0.35
HADHAP40939 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
HADHAP40939 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.26■□□□□ 0.35
HADHAP40939 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HADHAP40939 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.26■□□□□ 0.35
HADHAP40939 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HADHAP40939 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
HADHAP40939 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.26■□□□□ 0.35
HADHAP40939 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.26■□□□□ 0.35
HADHAP40939 FGFR3P6-201ENST00000457012 610 ntBASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms