Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.15■□□□□ 0.18
COL5A1P20908 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.15■□□□□ 0.18
COL5A1P20908 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL5A1P20908 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.15■□□□□ 0.18
COL5A1P20908 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL5A1P20908 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL5A1P20908 HLA-H-201ENST00000383620 1096 ntBASIC16.15■□□□□ 0.18
COL5A1P20908 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL5A1P20908 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL5A1P20908 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC16.15■□□□□ 0.18
COL5A1P20908 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL5A1P20908 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL5A1P20908 AC022494.1-201ENST00000466044 728 ntBASIC16.15■□□□□ 0.18
COL5A1P20908 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.15■□□□□ 0.18
COL5A1P20908 BANF1P1-201ENST00000553684 263 ntBASIC16.15■□□□□ 0.18
COL5A1P20908 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.15■□□□□ 0.18
COL5A1P20908 AL138918.1-201ENST00000568306 659 ntBASIC16.15■□□□□ 0.18
COL5A1P20908 MIR4492-201ENST00000581627 80 ntBASIC16.15■□□□□ 0.18
COL5A1P20908 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL5A1P20908 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC16.15■□□□□ 0.18
COL5A1P20908 AC004233.3-201ENST00000607794 1269 ntBASIC16.15■□□□□ 0.18
COL5A1P20908 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
COL5A1P20908 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.15■□□□□ 0.18
COL5A1P20908 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.15■□□□□ 0.18
COL5A1P20908 AC116353.5-201ENST00000638148 1699 ntBASIC16.15■□□□□ 0.18
COL5A1P20908 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.18
COL5A1P20908 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.14■□□□□ 0.17
COL5A1P20908 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.14■□□□□ 0.17
COL5A1P20908 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.14■□□□□ 0.17
COL5A1P20908 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.14■□□□□ 0.17
COL5A1P20908 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.14■□□□□ 0.17
COL5A1P20908 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.14■□□□□ 0.17
COL5A1P20908 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL5A1P20908 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
COL5A1P20908 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.14■□□□□ 0.17
COL5A1P20908 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
COL5A1P20908 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL5A1P20908 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL5A1P20908 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL5A1P20908 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.14■□□□□ 0.17
COL5A1P20908 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.14■□□□□ 0.17
COL5A1P20908 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL5A1P20908 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL5A1P20908 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.14■□□□□ 0.17
COL5A1P20908 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL5A1P20908 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.14■□□□□ 0.17
COL5A1P20908 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL5A1P20908 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL5A1P20908 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.14■□□□□ 0.17
COL5A1P20908 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL5A1P20908 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.14■□□□□ 0.17
COL5A1P20908 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL5A1P20908 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC16.14■□□□□ 0.17
COL5A1P20908 ZNF890P-202ENST00000530367 1156 ntBASIC16.14■□□□□ 0.17
COL5A1P20908 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.14■□□□□ 0.17
COL5A1P20908 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
COL5A1P20908 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
COL5A1P20908 AL133373.2-201ENST00000623187 2828 ntBASIC16.14■□□□□ 0.17
COL5A1P20908 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL5A1P20908 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL5A1P20908 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL5A1P20908 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL5A1P20908 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL5A1P20908 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.14■□□□□ 0.17
COL5A1P20908 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.13■□□□□ 0.17
COL5A1P20908 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL5A1P20908 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL5A1P20908 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
COL5A1P20908 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
COL5A1P20908 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL5A1P20908 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.13■□□□□ 0.17
COL5A1P20908 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
COL5A1P20908 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.13■□□□□ 0.17
COL5A1P20908 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
COL5A1P20908 AL080243.2-201ENST00000418783 582 ntBASIC16.13■□□□□ 0.17
COL5A1P20908 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.13■□□□□ 0.17
COL5A1P20908 NME2P1-201ENST00000426182 414 ntBASIC16.13■□□□□ 0.17
COL5A1P20908 HLA-V-204ENST00000476601 1289 ntBASIC16.13■□□□□ 0.17
COL5A1P20908 KRT18P34-201ENST00000488218 1270 ntBASIC16.13■□□□□ 0.17
COL5A1P20908 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.13■□□□□ 0.17
COL5A1P20908 AC140912.1-201ENST00000577171 1054 ntBASIC16.13■□□□□ 0.17
COL5A1P20908 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.13■□□□□ 0.17
COL5A1P20908 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL5A1P20908 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL5A1P20908 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.13■□□□□ 0.17
COL5A1P20908 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL5A1P20908 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.13■□□□□ 0.17
COL5A1P20908 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.13■□□□□ 0.17
COL5A1P20908 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
COL5A1P20908 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL5A1P20908 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16.13■□□□□ 0.17
COL5A1P20908 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
COL5A1P20908 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL5A1P20908 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL5A1P20908 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
COL5A1P20908 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL5A1P20908 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL5A1P20908 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
COL5A1P20908 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.13■□□□□ 0.17
COL5A1P20908 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms