Protein–RNA interactions for Protein: P13942

COL11A2, Collagen alpha-2(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,736 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A2P13942 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.54■□□□□ 0.88
COL11A2P13942 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL11A2P13942 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL11A2P13942 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC20.54■□□□□ 0.88
COL11A2P13942 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL11A2P13942 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL11A2P13942 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL11A2P13942 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
COL11A2P13942 AC007541.1-201ENST00000570282 1469 ntBASIC20.53■□□□□ 0.88
COL11A2P13942 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.53■□□□□ 0.88
COL11A2P13942 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL11A2P13942 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COL11A2P13942 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL11A2P13942 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC20.53■□□□□ 0.88
COL11A2P13942 MXI1-205ENST00000393134 889 ntTSL 2 BASIC20.53■□□□□ 0.88
COL11A2P13942 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL11A2P13942 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC20.53■□□□□ 0.88
COL11A2P13942 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC20.53■□□□□ 0.88
COL11A2P13942 AC105021.1-202ENST00000570572 669 ntBASIC20.53■□□□□ 0.88
COL11A2P13942 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC20.53■□□□□ 0.88
COL11A2P13942 MIR6805-201ENST00000615055 62 ntBASIC20.53■□□□□ 0.88
COL11A2P13942 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL11A2P13942 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.53■□□□□ 0.88
COL11A2P13942 BTBD7P1-201ENST00000447253 1453 ntBASIC20.53■□□□□ 0.88
COL11A2P13942 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL11A2P13942 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
COL11A2P13942 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL11A2P13942 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL11A2P13942 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.53■□□□□ 0.88
COL11A2P13942 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL11A2P13942 RBM39-205ENST00000397370 612 ntTSL 2 BASIC20.53■□□□□ 0.88
COL11A2P13942 TTTY23B-201ENST00000442790 549 ntBASIC20.53■□□□□ 0.88
COL11A2P13942 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COL11A2P13942 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC20.53■□□□□ 0.88
COL11A2P13942 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL11A2P13942 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL11A2P13942 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL11A2P13942 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL11A2P13942 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC20.52■□□□□ 0.88
COL11A2P13942 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL11A2P13942 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL11A2P13942 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL11A2P13942 AL021920.2-201ENST00000624828 1351 ntBASIC20.52■□□□□ 0.88
COL11A2P13942 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC20.52■□□□□ 0.88
COL11A2P13942 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL11A2P13942 SPDYE19P-201ENST00000338590 713 ntBASIC20.52■□□□□ 0.88
COL11A2P13942 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL11A2P13942 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
COL11A2P13942 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL11A2P13942 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL11A2P13942 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC20.52■□□□□ 0.88
COL11A2P13942 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC20.52■□□□□ 0.88
COL11A2P13942 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC20.52■□□□□ 0.88
COL11A2P13942 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC20.52■□□□□ 0.88
COL11A2P13942 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC20.52■□□□□ 0.88
COL11A2P13942 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
COL11A2P13942 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC20.52■□□□□ 0.88
COL11A2P13942 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL11A2P13942 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL11A2P13942 AL354751.1-201ENST00000412768 1863 ntBASIC20.52■□□□□ 0.87
COL11A2P13942 AC108860.2-201ENST00000562760 2183 ntBASIC20.52■□□□□ 0.87
COL11A2P13942 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
COL11A2P13942 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL11A2P13942 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL11A2P13942 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
COL11A2P13942 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL11A2P13942 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL11A2P13942 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC20.51■□□□□ 0.87
COL11A2P13942 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
COL11A2P13942 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC20.51■□□□□ 0.87
COL11A2P13942 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC20.51■□□□□ 0.87
COL11A2P13942 AL353779.1-201ENST00000434793 351 ntBASIC20.51■□□□□ 0.87
COL11A2P13942 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC20.51■□□□□ 0.87
COL11A2P13942 AC055876.2-201ENST00000531834 546 ntBASIC20.51■□□□□ 0.87
COL11A2P13942 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL11A2P13942 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC20.51■□□□□ 0.87
COL11A2P13942 APOC4-201ENST00000591600 348 ntTSL 3 BASIC20.51■□□□□ 0.87
COL11A2P13942 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
COL11A2P13942 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC20.51■□□□□ 0.87
COL11A2P13942 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL11A2P13942 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
COL11A2P13942 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL11A2P13942 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC20.51■□□□□ 0.87
COL11A2P13942 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC20.51■□□□□ 0.87
COL11A2P13942 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL11A2P13942 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL11A2P13942 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL11A2P13942 MIR658-201ENST00000385210 100 ntBASIC20.5■□□□□ 0.87
COL11A2P13942 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL11A2P13942 RN7SL618P-201ENST00000477850 296 ntBASIC20.5■□□□□ 0.87
COL11A2P13942 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC20.5■□□□□ 0.87
COL11A2P13942 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC20.5■□□□□ 0.87
COL11A2P13942 RAB35-202ENST00000534951 939 ntTSL 2 BASIC20.5■□□□□ 0.87
COL11A2P13942 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL11A2P13942 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC20.5■□□□□ 0.87
COL11A2P13942 QPRT-203ENST00000562473 579 ntTSL 3 BASIC20.5■□□□□ 0.87
COL11A2P13942 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL11A2P13942 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL11A2P13942 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20.5■□□□□ 0.87
COL11A2P13942 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms