Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
PROM1O43490 AL121761.2-201ENST00000598007 1648 ntBASIC16.22■□□□□ 0.19
PROM1O43490 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
PROM1O43490 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
PROM1O43490 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.21■□□□□ 0.19
PROM1O43490 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.21■□□□□ 0.19
PROM1O43490 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PROM1O43490 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PROM1O43490 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PROM1O43490 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.21■□□□□ 0.19
PROM1O43490 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PROM1O43490 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PROM1O43490 AC011270.2-201ENST00000624293 2550 ntBASIC16.21■□□□□ 0.19
PROM1O43490 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PROM1O43490 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PROM1O43490 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PROM1O43490 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.21■□□□□ 0.19
PROM1O43490 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.21■□□□□ 0.19
PROM1O43490 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PROM1O43490 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.21■□□□□ 0.19
PROM1O43490 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PROM1O43490 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.21■□□□□ 0.19
PROM1O43490 LAGE3P1-201ENST00000425356 484 ntBASIC16.21■□□□□ 0.19
PROM1O43490 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.21■□□□□ 0.19
PROM1O43490 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.21■□□□□ 0.19
PROM1O43490 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PROM1O43490 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
PROM1O43490 OR7E14P-202ENST00000530490 1290 ntBASIC16.21■□□□□ 0.19
PROM1O43490 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.21■□□□□ 0.19
PROM1O43490 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.21■□□□□ 0.19
PROM1O43490 AC104692.2-201ENST00000603054 253 ntBASIC16.21■□□□□ 0.19
PROM1O43490 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.21■□□□□ 0.19
PROM1O43490 AL031008.1-201ENST00000619963 541 ntBASIC16.21■□□□□ 0.19
PROM1O43490 CROCCP1-201ENST00000426910 5675 ntBASIC16.21■□□□□ 0.19
PROM1O43490 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
PROM1O43490 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PROM1O43490 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PROM1O43490 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PROM1O43490 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PROM1O43490 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
PROM1O43490 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PROM1O43490 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.21■□□□□ 0.19
PROM1O43490 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
PROM1O43490 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.21■□□□□ 0.18
PROM1O43490 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
PROM1O43490 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
PROM1O43490 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.21■□□□□ 0.18
PROM1O43490 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.2■□□□□ 0.18
PROM1O43490 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PROM1O43490 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.2■□□□□ 0.18
PROM1O43490 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
PROM1O43490 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
PROM1O43490 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
PROM1O43490 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PROM1O43490 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PROM1O43490 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.2■□□□□ 0.18
PROM1O43490 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PROM1O43490 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PROM1O43490 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PROM1O43490 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PROM1O43490 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PROM1O43490 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PROM1O43490 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PROM1O43490 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PROM1O43490 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.2■□□□□ 0.18
PROM1O43490 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PROM1O43490 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.2■□□□□ 0.18
PROM1O43490 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.2■□□□□ 0.18
PROM1O43490 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PROM1O43490 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.2■□□□□ 0.18
PROM1O43490 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.2■□□□□ 0.18
PROM1O43490 RPS2P1-201ENST00000434010 821 ntBASIC16.2■□□□□ 0.18
PROM1O43490 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.2■□□□□ 0.18
PROM1O43490 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PROM1O43490 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.2■□□□□ 0.18
PROM1O43490 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PROM1O43490 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.2■□□□□ 0.18
PROM1O43490 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.2■□□□□ 0.18
PROM1O43490 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.2■□□□□ 0.18
PROM1O43490 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.2■□□□□ 0.18
PROM1O43490 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PROM1O43490 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.2■□□□□ 0.18
PROM1O43490 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.2■□□□□ 0.18
PROM1O43490 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PROM1O43490 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PROM1O43490 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PROM1O43490 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.2■□□□□ 0.18
PROM1O43490 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
PROM1O43490 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PROM1O43490 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
PROM1O43490 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PROM1O43490 NKILA-202ENST00000614771 2598 ntBASIC16.2■□□□□ 0.18
PROM1O43490 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PROM1O43490 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PROM1O43490 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PROM1O43490 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PROM1O43490 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PROM1O43490 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PROM1O43490 AC092068.3-201ENST00000587894 2016 ntBASIC16.19■□□□□ 0.18
PROM1O43490 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms