Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 AC093909.1-201ENST00000504731 1122 ntBASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 IGHV3-65-201ENST00000523210 341 ntBASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 PCDHB17P-201ENST00000539533 2393 ntBASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS54Q9P1Q0 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
VPS54Q9P1Q0 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VPS54Q9P1Q0 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 SLC25A6P2-201ENST00000497974 877 ntBASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
VPS54Q9P1Q0 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 RNF216P1-203ENST00000404404 2427 ntBASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 AC002310.6-201ENST00000624451 1377 ntBASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 AC108073.2-201ENST00000464002 357 ntBASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 IGHV3-22-201ENST00000520721 359 ntBASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS54Q9P1Q0 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC19.62■□□□□ 0.73
VPS54Q9P1Q0 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC19.62■□□□□ 0.73
VPS54Q9P1Q0 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS54Q9P1Q0 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS54Q9P1Q0 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS54Q9P1Q0 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS54Q9P1Q0 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS54Q9P1Q0 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS54Q9P1Q0 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS54Q9P1Q0 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS54Q9P1Q0 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS54Q9P1Q0 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms