Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRIM39Q9HCM9 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 AC141586.5-201ENST00000624546 2050 ntBASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 MIR574-201ENST00000385209 96 ntBASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 PRSS29P-201ENST00000440800 595 ntBASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 PAWRP1-201ENST00000451083 565 ntBASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 AC004790.2-201ENST00000623588 572 ntBASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRIM39Q9HCM9 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 MRPL20P1-201ENST00000400819 433 ntBASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRIM39Q9HCM9 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 AL023806.1-201ENST00000603994 1649 ntBASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 CRYGEP-201ENST00000412192 528 ntBASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRIM39Q9HCM9 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms