Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 AC132008.2-207ENST00000454517 770 ntBASIC17.6■□□□□ 0.41
USP29Q9HBJ7 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 DUX4L17-201ENST00000557360 1267 ntBASIC17.6■□□□□ 0.41
USP29Q9HBJ7 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 AL355877.3-201ENST00000622820 899 ntBASIC17.6■□□□□ 0.41
USP29Q9HBJ7 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 AC097637.2-201ENST00000624096 1997 ntBASIC17.6■□□□□ 0.41
USP29Q9HBJ7 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
USP29Q9HBJ7 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 AL391005.1-201ENST00000623953 2435 ntBASIC17.59■□□□□ 0.41
USP29Q9HBJ7 PCDHB17P-201ENST00000539533 2393 ntBASIC17.59■□□□□ 0.41
USP29Q9HBJ7 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 RPS2P28-201ENST00000314255 741 ntBASIC17.59■□□□□ 0.41
USP29Q9HBJ7 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 RNPS1P1-201ENST00000507437 918 ntBASIC17.59■□□□□ 0.41
USP29Q9HBJ7 AC073648.2-201ENST00000510116 352 ntBASIC17.59■□□□□ 0.41
USP29Q9HBJ7 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 AP001269.4-201ENST00000609611 512 ntBASIC17.59■□□□□ 0.41
USP29Q9HBJ7 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
USP29Q9HBJ7 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.58■□□□□ 0.41
USP29Q9HBJ7 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
USP29Q9HBJ7 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.58■□□□□ 0.41
USP29Q9HBJ7 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.58■□□□□ 0.41
USP29Q9HBJ7 UBALD1-205ENST00000590891 2641 ntBASIC17.58■□□□□ 0.41
USP29Q9HBJ7 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
USP29Q9HBJ7 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
USP29Q9HBJ7 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
USP29Q9HBJ7 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
USP29Q9HBJ7 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
USP29Q9HBJ7 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 AF228730.7-201ENST00000641842 219 ntBASIC17.58■□□□□ 0.4
USP29Q9HBJ7 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 AC092171.3-201ENST00000610122 2651 ntBASIC17.58■□□□□ 0.4
USP29Q9HBJ7 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP29Q9HBJ7 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP29Q9HBJ7 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms