Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC28BQ9BUN5 AL135999.2-201ENST00000622438 1686 ntBASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 FAM45BP-202ENST00000592932 1624 ntBASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 TUBB8P12-201ENST00000308911 1335 ntBASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 TUBB7P-202ENST00000428444 1305 ntBASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 TUBB8P7-204ENST00000567960 1332 ntBASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 AL662844.4-201ENST00000606367 2838 ntBASIC16.65■□□□□ 0.26
CCDC28BQ9BUN5 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.64■□□□□ 0.26
CCDC28BQ9BUN5 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
CCDC28BQ9BUN5 AC092384.3-202ENST00000564646 2873 ntBASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 KRT8P10-201ENST00000450021 1447 ntBASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 HYMAI-201ENST00000635591 3347 ntBASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 AL391256.1-201ENST00000443260 1855 ntBASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC28BQ9BUN5 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 AC125634.1-201ENST00000438758 1403 ntBASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 AL645728.1-201ENST00000366221 2101 ntBASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.63■□□□□ 0.25
CCDC28BQ9BUN5 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms