Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
TRIM43Q96BQ3 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
TRIM43Q96BQ3 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM43Q96BQ3 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM43Q96BQ3 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC18.33■□□□□ 0.53
TRIM43Q96BQ3 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM43Q96BQ3 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
TRIM43Q96BQ3 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM43Q96BQ3 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.33■□□□□ 0.53
TRIM43Q96BQ3 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRIM43Q96BQ3 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 RAB43P1-201ENST00000561790 589 ntBASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 LITAF-210ENST00000571976 548 ntTSL 2 BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 LITAF-214ENST00000574703 486 ntTSL 2 BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 RN7SL828P-201ENST00000607615 303 ntBASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 AC004790.1-201ENST00000612686 536 ntBASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TRIM43Q96BQ3 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 AC092658.1-201ENST00000505836 891 ntBASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 AC084346.2-201ENST00000607097 949 ntBASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 AP001350.2-201ENST00000625104 1094 ntBASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 AC131009.4-201ENST00000624048 1740 ntBASIC18.32■□□□□ 0.52
TRIM43Q96BQ3 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 LINC00896-202ENST00000609602 2128 ntBASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 HLA-H-201ENST00000383620 1096 ntBASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 CENPM-206ENST00000407253 818 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 AC087499.6-201ENST00000411576 835 ntBASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 AL353705.2-201ENST00000428243 662 ntBASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 AC011495.1-201ENST00000498085 584 ntBASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 MPDU1-223ENST00000582151 728 ntBASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 MIR4259-201ENST00000584466 101 ntBASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.31■□□□□ 0.52
TRIM43Q96BQ3 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms