Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
SF3A1Q15459 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SF3A1Q15459 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
SF3A1Q15459 PMPCAP1-201ENST00000508114 1576 ntBASIC19.77■□□□□ 0.76
SF3A1Q15459 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SF3A1Q15459 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SF3A1Q15459 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SF3A1Q15459 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
SF3A1Q15459 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
SF3A1Q15459 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SF3A1Q15459 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
SF3A1Q15459 FLJ38576-201ENST00000623820 2459 ntBASIC19.77■□□□□ 0.75
SF3A1Q15459 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
SF3A1Q15459 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SF3A1Q15459 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.75
SF3A1Q15459 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
SF3A1Q15459 UBALD1-205ENST00000590891 2641 ntBASIC19.76■□□□□ 0.75
SF3A1Q15459 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC19.76■□□□□ 0.75
SF3A1Q15459 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
SF3A1Q15459 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC19.76■□□□□ 0.75
SF3A1Q15459 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC19.76■□□□□ 0.75
SF3A1Q15459 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
SF3A1Q15459 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC19.76■□□□□ 0.75
SF3A1Q15459 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC19.76■□□□□ 0.75
SF3A1Q15459 EGFEM1P-202ENST00000431685 1563 ntBASIC19.76■□□□□ 0.75
SF3A1Q15459 ARMC10P1-201ENST00000313754 855 ntBASIC19.76■□□□□ 0.75
SF3A1Q15459 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 ATP5G2P1-201ENST00000433580 426 ntBASIC19.76■□□□□ 0.75
SF3A1Q15459 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC19.76■□□□□ 0.75
SF3A1Q15459 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.76■□□□□ 0.75
SF3A1Q15459 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.76■□□□□ 0.75
SF3A1Q15459 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 AC104819.1-201ENST00000504587 486 ntBASIC19.76■□□□□ 0.75
SF3A1Q15459 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 AC092329.2-201ENST00000598402 547 ntBASIC19.76■□□□□ 0.75
SF3A1Q15459 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC19.76■□□□□ 0.75
SF3A1Q15459 AC114341.1-201ENST00000618070 349 ntBASIC19.76■□□□□ 0.75
SF3A1Q15459 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC19.76■□□□□ 0.75
SF3A1Q15459 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
SF3A1Q15459 AC079328.2-201ENST00000561241 3354 ntBASIC19.76■□□□□ 0.75
SF3A1Q15459 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.76■□□□□ 0.75
SF3A1Q15459 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SF3A1Q15459 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.76■□□□□ 0.75
SF3A1Q15459 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
SF3A1Q15459 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC19.75■□□□□ 0.75
SF3A1Q15459 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SF3A1Q15459 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.75■□□□□ 0.75
SF3A1Q15459 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
SF3A1Q15459 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
SF3A1Q15459 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.75■□□□□ 0.75
SF3A1Q15459 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
SF3A1Q15459 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SF3A1Q15459 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SF3A1Q15459 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SF3A1Q15459 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SF3A1Q15459 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.75■□□□□ 0.75
SF3A1Q15459 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.75■□□□□ 0.75
SF3A1Q15459 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.75■□□□□ 0.75
SF3A1Q15459 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
SF3A1Q15459 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC19.75■□□□□ 0.75
SF3A1Q15459 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
SF3A1Q15459 AC091076.1-201ENST00000610741 619 ntBASIC19.75■□□□□ 0.75
SF3A1Q15459 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SF3A1Q15459 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SF3A1Q15459 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC19.75■□□□□ 0.75
SF3A1Q15459 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SF3A1Q15459 AC148477.5-201ENST00000625164 1645 ntBASIC19.75■□□□□ 0.75
SF3A1Q15459 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SF3A1Q15459 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC19.75■□□□□ 0.75
SF3A1Q15459 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SF3A1Q15459 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SF3A1Q15459 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SF3A1Q15459 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SF3A1Q15459 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SF3A1Q15459 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC19.74■□□□□ 0.75
SF3A1Q15459 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SF3A1Q15459 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
SF3A1Q15459 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SF3A1Q15459 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.74■□□□□ 0.75
SF3A1Q15459 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SF3A1Q15459 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms