Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN1P58418 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC15.29■□□□□ 0.04
CLRN1P58418 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN1P58418 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN1P58418 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN1P58418 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CLRN1P58418 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN1P58418 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN1P58418 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN1P58418 LINC00982-205ENST00000420957 435 ntBASIC15.29■□□□□ 0.04
CLRN1P58418 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
CLRN1P58418 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN1P58418 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC15.29■□□□□ 0.04
CLRN1P58418 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC15.29■□□□□ 0.04
CLRN1P58418 CYB561-217ENST00000582997 877 ntTSL 5 BASIC15.29■□□□□ 0.04
CLRN1P58418 AC008608.2-201ENST00000606089 416 ntBASIC15.29■□□□□ 0.04
CLRN1P58418 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN1P58418 AC004817.3-201ENST00000602957 2129 ntBASIC15.29■□□□□ 0.04
CLRN1P58418 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC15.29■□□□□ 0.04
CLRN1P58418 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN1P58418 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN1P58418 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC15.29■□□□□ 0.04
CLRN1P58418 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CLRN1P58418 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
CLRN1P58418 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN1P58418 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN1P58418 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
CLRN1P58418 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.28■□□□□ 0.04
CLRN1P58418 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.28■□□□□ 0.04
CLRN1P58418 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC15.28■□□□□ 0.04
CLRN1P58418 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC15.28■□□□□ 0.04
CLRN1P58418 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC15.28■□□□□ 0.04
CLRN1P58418 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.28■□□□□ 0.04
CLRN1P58418 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC15.28■□□□□ 0.04
CLRN1P58418 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CLRN1P58418 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC15.28■□□□□ 0.04
CLRN1P58418 KRT18P56-201ENST00000507275 550 ntBASIC15.28■□□□□ 0.04
CLRN1P58418 SKP2-204ENST00000508514 821 ntTSL 3 BASIC15.28■□□□□ 0.04
CLRN1P58418 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC15.28■□□□□ 0.04
CLRN1P58418 CLEC4GP1-201ENST00000596555 870 ntBASIC15.28■□□□□ 0.04
CLRN1P58418 AL022326.1-202ENST00000641533 845 ntBASIC15.28■□□□□ 0.04
CLRN1P58418 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC15.28■□□□□ 0.04
CLRN1P58418 AC009053.2-201ENST00000563701 2365 ntBASIC15.28■□□□□ 0.04
CLRN1P58418 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC15.28■□□□□ 0.04
CLRN1P58418 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CLRN1P58418 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.28■□□□□ 0.04
CLRN1P58418 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
CLRN1P58418 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CLRN1P58418 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
CLRN1P58418 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 STX3-203ENST00000529177 1571 ntTSL 2 BASIC15.28■□□□□ 0.04
CLRN1P58418 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLRN1P58418 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN1P58418 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
CLRN1P58418 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN1P58418 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC15.27■□□□□ 0.04
CLRN1P58418 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN1P58418 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN1P58418 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
CLRN1P58418 GID4-202ENST00000376345 1391 ntTSL 3 BASIC15.27■□□□□ 0.04
CLRN1P58418 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
CLRN1P58418 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
CLRN1P58418 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.27■□□□□ 0.04
CLRN1P58418 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.04
CLRN1P58418 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
CLRN1P58418 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CLRN1P58418 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN1P58418 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
CLRN1P58418 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLRN1P58418 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
CLRN1P58418 SCARNA2-201ENST00000458748 420 ntBASIC15.27■□□□□ 0.04
CLRN1P58418 SDHD-206ENST00000528182 754 ntTSL 3 BASIC15.27■□□□□ 0.04
CLRN1P58418 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
CLRN1P58418 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC15.27■□□□□ 0.04
CLRN1P58418 NKAPP1-205ENST00000585790 367 ntBASIC15.27■□□□□ 0.04
CLRN1P58418 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.27■□□□□ 0.04
CLRN1P58418 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CLRN1P58418 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms