Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.69■□□□□ 0.58
CLCN3P51790 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLCN3P51790 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLCN3P51790 FOS-208ENST00000555686 1496 ntTSL 2 BASIC18.69■□□□□ 0.58
CLCN3P51790 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLCN3P51790 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CLCN3P51790 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLCN3P51790 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLCN3P51790 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLCN3P51790 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLCN3P51790 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLCN3P51790 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLCN3P51790 TOP3BP1-201ENST00000420768 1380 ntBASIC18.68■□□□□ 0.58
CLCN3P51790 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.68■□□□□ 0.58
CLCN3P51790 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.68■□□□□ 0.58
CLCN3P51790 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLCN3P51790 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLCN3P51790 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLCN3P51790 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLCN3P51790 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC18.68■□□□□ 0.58
CLCN3P51790 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.68■□□□□ 0.58
CLCN3P51790 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CLCN3P51790 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLCN3P51790 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.68■□□□□ 0.58
CLCN3P51790 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLCN3P51790 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC18.68■□□□□ 0.58
CLCN3P51790 AL355306.1-201ENST00000415580 579 ntBASIC18.68■□□□□ 0.58
CLCN3P51790 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLCN3P51790 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CLCN3P51790 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC18.68■□□□□ 0.58
CLCN3P51790 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLCN3P51790 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.68■□□□□ 0.58
CLCN3P51790 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.68■□□□□ 0.58
CLCN3P51790 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
CLCN3P51790 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CLCN3P51790 AC022145.2-201ENST00000598203 171 ntBASIC18.68■□□□□ 0.58
CLCN3P51790 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLCN3P51790 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC18.68■□□□□ 0.58
CLCN3P51790 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.68■□□□□ 0.58
CLCN3P51790 AL353732.1-201ENST00000569618 1459 ntBASIC18.68■□□□□ 0.58
CLCN3P51790 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.68■□□□□ 0.58
CLCN3P51790 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLCN3P51790 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLCN3P51790 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLCN3P51790 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLCN3P51790 AC090340.1-201ENST00000620778 4980 ntBASIC18.68■□□□□ 0.58
CLCN3P51790 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLCN3P51790 STX3-203ENST00000529177 1571 ntTSL 2 BASIC18.68■□□□□ 0.58
CLCN3P51790 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CLCN3P51790 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLCN3P51790 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.68■□□□□ 0.58
CLCN3P51790 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC18.67■□□□□ 0.58
CLCN3P51790 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLCN3P51790 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLCN3P51790 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CLCN3P51790 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLCN3P51790 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.67■□□□□ 0.58
CLCN3P51790 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CLCN3P51790 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLCN3P51790 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CLCN3P51790 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.67■□□□□ 0.58
CLCN3P51790 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLCN3P51790 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CLCN3P51790 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLCN3P51790 TIMM8BP1-201ENST00000452384 211 ntBASIC18.67■□□□□ 0.58
CLCN3P51790 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CLCN3P51790 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.67■□□□□ 0.58
CLCN3P51790 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
CLCN3P51790 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.67■□□□□ 0.58
CLCN3P51790 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.67■□□□□ 0.58
CLCN3P51790 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.67■□□□□ 0.58
CLCN3P51790 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.67■□□□□ 0.58
CLCN3P51790 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.67■□□□□ 0.58
CLCN3P51790 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.67■□□□□ 0.58
CLCN3P51790 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.67■□□□□ 0.58
CLCN3P51790 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLCN3P51790 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.67■□□□□ 0.58
CLCN3P51790 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
CLCN3P51790 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.67■□□□□ 0.58
CLCN3P51790 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CLCN3P51790 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLCN3P51790 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLCN3P51790 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CLCN3P51790 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.67■□□□□ 0.58
CLCN3P51790 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLCN3P51790 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CLCN3P51790 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CLCN3P51790 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.67■□□□□ 0.58
CLCN3P51790 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLCN3P51790 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CLCN3P51790 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.67■□□□□ 0.58
CLCN3P51790 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLCN3P51790 AL121761.2-201ENST00000598007 1648 ntBASIC18.67■□□□□ 0.58
CLCN3P51790 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CLCN3P51790 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.66■□□□□ 0.58
CLCN3P51790 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.66■□□□□ 0.58
CLCN3P51790 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLCN3P51790 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLCN3P51790 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
CLCN3P51790 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms