Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
HMGB3O15347 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC13.8□□□□□ -0.2
HMGB3O15347 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
HMGB3O15347 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC13.8□□□□□ -0.2
HMGB3O15347 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC13.8□□□□□ -0.2
HMGB3O15347 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
HMGB3O15347 DIAPH2-201ENST00000324765 9333 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
HMGB3O15347 STRCP1-201ENST00000509801 5328 ntBASIC13.8□□□□□ -0.2
HMGB3O15347 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC13.8□□□□□ -0.2
HMGB3O15347 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC13.8□□□□□ -0.2
HMGB3O15347 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC13.8□□□□□ -0.2
HMGB3O15347 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC13.8□□□□□ -0.2
HMGB3O15347 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC13.8□□□□□ -0.2
HMGB3O15347 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
HMGB3O15347 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
HMGB3O15347 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
HMGB3O15347 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC13.8□□□□□ -0.2
HMGB3O15347 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC13.8□□□□□ -0.2
HMGB3O15347 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC13.8□□□□□ -0.2
HMGB3O15347 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC13.8□□□□□ -0.2
HMGB3O15347 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC13.8□□□□□ -0.2
HMGB3O15347 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC13.8□□□□□ -0.2
HMGB3O15347 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
HMGB3O15347 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
HMGB3O15347 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC13.8□□□□□ -0.2
HMGB3O15347 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC13.8□□□□□ -0.2
HMGB3O15347 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 AC016396.2-201ENST00000562575 1417 ntBASIC13.8□□□□□ -0.2
HMGB3O15347 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
HMGB3O15347 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
HMGB3O15347 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 AC092053.1-201ENST00000605787 1936 ntBASIC13.8□□□□□ -0.2
HMGB3O15347 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HMGB3O15347 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC13.79□□□□□ -0.2
HMGB3O15347 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
HMGB3O15347 AC092364.2-201ENST00000596710 2692 ntBASIC13.79□□□□□ -0.2
HMGB3O15347 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
HMGB3O15347 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
HMGB3O15347 AC087386.2-201ENST00000623212 4637 ntBASIC13.79□□□□□ -0.2
HMGB3O15347 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.79□□□□□ -0.2
HMGB3O15347 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 ZNF646-202ENST00000394979 8118 ntAPPRIS ALT2 BASIC13.79□□□□□ -0.2
HMGB3O15347 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC13.79□□□□□ -0.2
HMGB3O15347 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC13.79□□□□□ -0.2
HMGB3O15347 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
HMGB3O15347 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC13.79□□□□□ -0.2
HMGB3O15347 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
HMGB3O15347 AF186192.3-201ENST00000583427 947 ntBASIC13.79□□□□□ -0.2
HMGB3O15347 AC073195.1-201ENST00000607241 877 ntBASIC13.79□□□□□ -0.2
HMGB3O15347 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 AC078925.2-201ENST00000624013 1973 ntBASIC13.79□□□□□ -0.2
HMGB3O15347 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC13.79□□□□□ -0.2
HMGB3O15347 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC13.79□□□□□ -0.2
HMGB3O15347 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC13.79□□□□□ -0.2
HMGB3O15347 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC13.79□□□□□ -0.2
HMGB3O15347 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC13.79□□□□□ -0.2
HMGB3O15347 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 ING5-213ENST00000636051 4199 ntTSL 5 BASIC13.79□□□□□ -0.2
HMGB3O15347 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HMGB3O15347 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms