Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA3Q9Y5H0 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.69■□□□□ 0.26
PCDHGA3Q9Y5H0 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA3Q9Y5H0 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA3Q9Y5H0 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA3Q9Y5H0 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA3Q9Y5H0 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA3Q9Y5H0 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA3Q9Y5H0 NCF1C-201ENST00000438382 1427 ntBASIC16.69■□□□□ 0.26
PCDHGA3Q9Y5H0 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.69■□□□□ 0.26
PCDHGA3Q9Y5H0 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA3Q9Y5H0 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA3Q9Y5H0 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDHGA3Q9Y5H0 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 AP006288.1-201ENST00000446065 395 ntBASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 SIGLEC30P-201ENST00000455569 941 ntBASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
PCDHGA3Q9Y5H0 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 AC002310.6-201ENST00000624451 1377 ntBASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 ELK2BP-201ENST00000415014 1224 ntBASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDHGA3Q9Y5H0 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA3Q9Y5H0 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.66■□□□□ 0.26
PCDHGA3Q9Y5H0 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA3Q9Y5H0 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.66■□□□□ 0.26
PCDHGA3Q9Y5H0 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA3Q9Y5H0 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA3Q9Y5H0 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA3Q9Y5H0 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA3Q9Y5H0 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA3Q9Y5H0 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
PCDHGA3Q9Y5H0 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA3Q9Y5H0 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.66■□□□□ 0.26
PCDHGA3Q9Y5H0 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.66■□□□□ 0.26
PCDHGA3Q9Y5H0 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.66■□□□□ 0.26
PCDHGA3Q9Y5H0 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PCDHGA3Q9Y5H0 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms