Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 PON3-203ENST00000427422 894 ntTSL 3 BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 ACE-204ENST00000428043 5120 ntTSL 2 BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 CYP51A1P2-201ENST00000419457 1499 ntBASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC19.72■□□□□ 0.75
CTDP1Q9Y5B0 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 AL390961.4-201ENST00000623958 2535 ntBASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 AC002056.1-201ENST00000395613 760 ntBASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CTDP1Q9Y5B0 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 AP000344.2-201ENST00000512987 629 ntBASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 AP002472.1-201ENST00000577490 586 ntBASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 AL355385.1-201ENST00000606123 409 ntBASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 REXO1L3P-201ENST00000622202 1288 ntBASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTDP1Q9Y5B0 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CTDP1Q9Y5B0 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.69■□□□□ 0.74
CTDP1Q9Y5B0 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTDP1Q9Y5B0 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTDP1Q9Y5B0 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.69■□□□□ 0.74
CTDP1Q9Y5B0 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms