Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AC006557.2-201ENST00000592985 1240 ntBASIC17.75■□□□□ 0.43
AP4E1Q9UPM8 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
AP4E1Q9UPM8 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
AP4E1Q9UPM8 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
AP4E1Q9UPM8 AC106886.4-201ENST00000623557 2502 ntBASIC17.75■□□□□ 0.43
AP4E1Q9UPM8 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
AP4E1Q9UPM8 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.75■□□□□ 0.43
AP4E1Q9UPM8 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
AP4E1Q9UPM8 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
AP4E1Q9UPM8 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
AP4E1Q9UPM8 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 AC006504.4-201ENST00000592118 1568 ntBASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 NKILA-202ENST00000614771 2598 ntBASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.74■□□□□ 0.43
AP4E1Q9UPM8 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 KRT18P67-201ENST00000432816 1264 ntBASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 AF186996.4-201ENST00000467186 377 ntBASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 OR6D1P-203ENST00000641209 4860 ntBASIC17.73■□□□□ 0.43
AP4E1Q9UPM8 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 AC011676.5-201ENST00000624864 2660 ntBASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 HNRNPDP1-201ENST00000439535 754 ntBASIC17.72■□□□□ 0.43
AP4E1Q9UPM8 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms