Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 AC133963.1-201ENST00000504166 1679 ntBASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 TSSK5P-201ENST00000423978 907 ntBASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 AC097493.3-201ENST00000509725 367 ntBASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 LINC01225-203ENST00000563550 1244 ntBASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC32.23■■■□□ 2.75
SHROOM4Q9ULL8 AC018470.1-201ENST00000624790 3129 ntBASIC32.22■■■□□ 2.75
SHROOM4Q9ULL8 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC32.22■■■□□ 2.75
SHROOM4Q9ULL8 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
SHROOM4Q9ULL8 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC32.22■■■□□ 2.75
SHROOM4Q9ULL8 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
SHROOM4Q9ULL8 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC32.22■■■□□ 2.75
SHROOM4Q9ULL8 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
SHROOM4Q9ULL8 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
SHROOM4Q9ULL8 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
SHROOM4Q9ULL8 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC32.22■■■□□ 2.75
SHROOM4Q9ULL8 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC32.22■■■□□ 2.75
SHROOM4Q9ULL8 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC32.22■■■□□ 2.75
SHROOM4Q9ULL8 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC32.22■■■□□ 2.75
SHROOM4Q9ULL8 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
SHROOM4Q9ULL8 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC32.21■■■□□ 2.75
SHROOM4Q9ULL8 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
SHROOM4Q9ULL8 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
SHROOM4Q9ULL8 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
SHROOM4Q9ULL8 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
SHROOM4Q9ULL8 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC32.21■■■□□ 2.75
SHROOM4Q9ULL8 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
SHROOM4Q9ULL8 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
SHROOM4Q9ULL8 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC32.21■■■□□ 2.75
SHROOM4Q9ULL8 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC32.21■■■□□ 2.75
SHROOM4Q9ULL8 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC32.21■■■□□ 2.75
SHROOM4Q9ULL8 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC32.21■■■□□ 2.75
SHROOM4Q9ULL8 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC32.21■■■□□ 2.75
SHROOM4Q9ULL8 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC32.21■■■□□ 2.75
SHROOM4Q9ULL8 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC32.2■■■□□ 2.75
SHROOM4Q9ULL8 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
SHROOM4Q9ULL8 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
SHROOM4Q9ULL8 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC32.2■■■□□ 2.75
SHROOM4Q9ULL8 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC32.2■■■□□ 2.75
SHROOM4Q9ULL8 HARS-203ENST00000431330 1774 ntTSL 2 BASIC32.2■■■□□ 2.75
SHROOM4Q9ULL8 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
SHROOM4Q9ULL8 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC32.2■■■□□ 2.75
SHROOM4Q9ULL8 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC32.2■■■□□ 2.75
SHROOM4Q9ULL8 IGHV3-71-201ENST00000523324 359 ntBASIC32.2■■■□□ 2.75
SHROOM4Q9ULL8 AC010336.2-201ENST00000564226 506 ntBASIC32.2■■■□□ 2.75
SHROOM4Q9ULL8 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC32.2■■■□□ 2.75
SHROOM4Q9ULL8 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
SHROOM4Q9ULL8 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
SHROOM4Q9ULL8 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC32.2■■■□□ 2.74
SHROOM4Q9ULL8 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC32.2■■■□□ 2.74
SHROOM4Q9ULL8 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
SHROOM4Q9ULL8 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC32.2■■■□□ 2.74
SHROOM4Q9ULL8 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
SHROOM4Q9ULL8 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
SHROOM4Q9ULL8 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
SHROOM4Q9ULL8 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC32.19■■■□□ 2.74
SHROOM4Q9ULL8 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
SHROOM4Q9ULL8 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC32.19■■■□□ 2.74
SHROOM4Q9ULL8 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
SHROOM4Q9ULL8 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC32.19■■■□□ 2.74
SHROOM4Q9ULL8 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC32.19■■■□□ 2.74
SHROOM4Q9ULL8 SPTLC1P1-201ENST00000447199 261 ntBASIC32.19■■■□□ 2.74
SHROOM4Q9ULL8 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC32.19■■■□□ 2.74
SHROOM4Q9ULL8 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC32.19■■■□□ 2.74
SHROOM4Q9ULL8 MIR6080-201ENST00000617359 66 ntBASIC32.19■■■□□ 2.74
SHROOM4Q9ULL8 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC32.19■■■□□ 2.74
SHROOM4Q9ULL8 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
SHROOM4Q9ULL8 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC32.19■■■□□ 2.74
SHROOM4Q9ULL8 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC32.19■■■□□ 2.74
SHROOM4Q9ULL8 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC32.19■■■□□ 2.74
SHROOM4Q9ULL8 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC32.19■■■□□ 2.74
SHROOM4Q9ULL8 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
SHROOM4Q9ULL8 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC32.18■■■□□ 2.74
SHROOM4Q9ULL8 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
SHROOM4Q9ULL8 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC32.18■■■□□ 2.74
SHROOM4Q9ULL8 AC241585.1-201ENST00000433527 519 ntBASIC32.18■■■□□ 2.74
SHROOM4Q9ULL8 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC32.18■■■□□ 2.74
SHROOM4Q9ULL8 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC32.18■■■□□ 2.74
SHROOM4Q9ULL8 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC32.18■■■□□ 2.74
SHROOM4Q9ULL8 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC32.18■■■□□ 2.74
SHROOM4Q9ULL8 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
SHROOM4Q9ULL8 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC32.18■■■□□ 2.74
SHROOM4Q9ULL8 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC32.18■■■□□ 2.74
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms