Protein–RNA interactions for Protein: Q9UDT6

CLIP2, CAP-Gly domain-containing linker protein 2, humanhuman

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2Q9UDT6 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLIP2Q9UDT6 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLIP2Q9UDT6 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLIP2Q9UDT6 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLIP2Q9UDT6 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CLIP2Q9UDT6 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CLIP2Q9UDT6 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 ACTG1P4-201ENST00000425123 1122 ntBASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 RNA5SP416-201ENST00000516838 111 ntBASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 TCAP-202ENST00000578283 583 ntTSL 5 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 AC064836.3-201ENST00000607928 673 ntBASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CLIP2Q9UDT6 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 AL023806.1-201ENST00000603994 1649 ntBASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 NKILA-202ENST00000614771 2598 ntBASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 LYSMD4-203ENST00000378904 2122 ntBASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 METTL26-205ENST00000397666 726 ntTSL 2 BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 KRT18P2-201ENST00000447938 1258 ntBASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 AL805961.1-202ENST00000641562 540 ntBASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CLIP2Q9UDT6 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 AP001094.4-201ENST00000579008 2176 ntBASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 BEX3-201ENST00000361298 921 ntTSL 2 BASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 IMP4-203ENST00000409935 958 ntTSL 5 BASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 CRYGEP-201ENST00000412192 528 ntBASIC20.27■□□□□ 0.84
CLIP2Q9UDT6 BX842568.4-201ENST00000421222 227 ntBASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms