Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 AL391256.1-201ENST00000443260 1855 ntBASIC17.03■□□□□ 0.32
TREX1Q9NSU2 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TREX1Q9NSU2 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TREX1Q9NSU2 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
TREX1Q9NSU2 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.02■□□□□ 0.32
TREX1Q9NSU2 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TREX1Q9NSU2 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
TREX1Q9NSU2 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.02■□□□□ 0.32
TREX1Q9NSU2 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TREX1Q9NSU2 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.02■□□□□ 0.32
TREX1Q9NSU2 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
TREX1Q9NSU2 HLA-A-202ENST00000376806 1854 ntBASIC17.02■□□□□ 0.32
TREX1Q9NSU2 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.02■□□□□ 0.32
TREX1Q9NSU2 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TREX1Q9NSU2 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.02■□□□□ 0.32
TREX1Q9NSU2 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.02■□□□□ 0.32
TREX1Q9NSU2 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.02■□□□□ 0.32
TREX1Q9NSU2 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.02■□□□□ 0.32
TREX1Q9NSU2 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.02■□□□□ 0.32
TREX1Q9NSU2 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.02■□□□□ 0.32
TREX1Q9NSU2 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.02■□□□□ 0.32
TREX1Q9NSU2 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.02■□□□□ 0.32
TREX1Q9NSU2 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
TREX1Q9NSU2 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TREX1Q9NSU2 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TREX1Q9NSU2 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
TREX1Q9NSU2 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TREX1Q9NSU2 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.31
TREX1Q9NSU2 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.31
TREX1Q9NSU2 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
TREX1Q9NSU2 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
TREX1Q9NSU2 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.01■□□□□ 0.31
TREX1Q9NSU2 PTCHD3P3-201ENST00000403073 906 ntBASIC17.01■□□□□ 0.31
TREX1Q9NSU2 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 LAGE3P1-201ENST00000425356 484 ntBASIC17.01■□□□□ 0.31
TREX1Q9NSU2 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 AC107918.4-202ENST00000641623 219 ntBASIC17.01■□□□□ 0.31
TREX1Q9NSU2 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TREX1Q9NSU2 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
TREX1Q9NSU2 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
TREX1Q9NSU2 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TREX1Q9NSU2 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17■□□□□ 0.31
TREX1Q9NSU2 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
TREX1Q9NSU2 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17■□□□□ 0.31
TREX1Q9NSU2 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17■□□□□ 0.31
TREX1Q9NSU2 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17■□□□□ 0.31
TREX1Q9NSU2 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TREX1Q9NSU2 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17■□□□□ 0.31
TREX1Q9NSU2 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17■□□□□ 0.31
TREX1Q9NSU2 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17■□□□□ 0.31
TREX1Q9NSU2 ELK2BP-201ENST00000415014 1224 ntBASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms