Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 TOP3BP1-201ENST00000420768 1380 ntBASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 FOS-208ENST00000555686 1496 ntTSL 2 BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 STX3-203ENST00000529177 1571 ntTSL 2 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 AC023141.5-201ENST00000458585 616 ntBASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 AC079140.1-201ENST00000508039 487 ntBASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 AL009183.1-201ENST00000603760 355 ntBASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
PAAF1Q9BRP4 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 TFAMP1-201ENST00000412727 736 ntBASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 HLA-J-203ENST00000494367 1087 ntBASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 AL135744.1-201ENST00000565098 629 ntBASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PAAF1Q9BRP4 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 AL627223.1-201ENST00000416693 442 ntBASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 SPDYE11-202ENST00000450699 704 ntBASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 SPDYE9P-201ENST00000570642 692 ntBASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 SPDYE10P-202ENST00000612005 668 ntBASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 SPDYE8P-202ENST00000612377 668 ntBASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PAAF1Q9BRP4 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms