Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC14.99□□□□□ -0.01
NKX3-1Q99801 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC14.99□□□□□ -0.01
NKX3-1Q99801 FGF14-AS2-201ENST00000606448 1074 ntBASIC14.99□□□□□ -0.01
NKX3-1Q99801 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC14.99□□□□□ -0.01
NKX3-1Q99801 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC14.99□□□□□ -0.01
NKX3-1Q99801 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
NKX3-1Q99801 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC14.99□□□□□ -0.01
NKX3-1Q99801 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC14.99□□□□□ -0.01
NKX3-1Q99801 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 DDT-203ENST00000403754 569 ntTSL 3 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 AC096633.1-201ENST00000422446 749 ntBASIC14.98□□□□□ -0.01
NKX3-1Q99801 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 DDT-206ENST00000430101 573 ntTSL 2 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 SPDYE13P-201ENST00000445314 798 ntBASIC14.98□□□□□ -0.01
NKX3-1Q99801 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 AC019129.2-201ENST00000609837 1235 ntBASIC14.98□□□□□ -0.01
NKX3-1Q99801 GXYLT1P4-201ENST00000613576 1192 ntBASIC14.98□□□□□ -0.01
NKX3-1Q99801 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
NKX3-1Q99801 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NKX3-1Q99801 LINC00554-201ENST00000564841 3011 ntBASIC14.98□□□□□ -0.01
NKX3-1Q99801 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
NKX3-1Q99801 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC14.97□□□□□ -0.01
NKX3-1Q99801 PAUPAR-201ENST00000630360 2965 ntBASIC14.97□□□□□ -0.01
NKX3-1Q99801 TBC1D3P5-201ENST00000579401 1545 ntBASIC14.97□□□□□ -0.01
NKX3-1Q99801 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
NKX3-1Q99801 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NKX3-1Q99801 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NKX3-1Q99801 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC14.97□□□□□ -0.01
NKX3-1Q99801 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.97□□□□□ -0.01
NKX3-1Q99801 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
NKX3-1Q99801 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC14.97□□□□□ -0.01
NKX3-1Q99801 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC14.97□□□□□ -0.01
NKX3-1Q99801 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
NKX3-1Q99801 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
NKX3-1Q99801 AC007967.3-201ENST00000434308 558 ntBASIC14.97□□□□□ -0.01
NKX3-1Q99801 HOMER2P1-201ENST00000455653 964 ntBASIC14.97□□□□□ -0.01
NKX3-1Q99801 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC14.97□□□□□ -0.01
NKX3-1Q99801 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC14.97□□□□□ -0.01
NKX3-1Q99801 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
NKX3-1Q99801 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC14.97□□□□□ -0.01
NKX3-1Q99801 HYMAI.1-201ENST00000620949 238 ntBASIC14.97□□□□□ -0.01
NKX3-1Q99801 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
NKX3-1Q99801 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
NKX3-1Q99801 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
NKX3-1Q99801 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms