Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 ACTBP11-201ENST00000436287 1126 ntBASIC16.7■□□□□ 0.26
VPS13AQ96RL7 AC099548.2-209ENST00000480264 625 ntBASIC16.7■□□□□ 0.26
VPS13AQ96RL7 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 MIR6727-201ENST00000620702 65 ntBASIC16.7■□□□□ 0.26
VPS13AQ96RL7 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 MIR3909-201ENST00000579518 119 ntBASIC16.7■□□□□ 0.26
VPS13AQ96RL7 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 AP005482.1-201ENST00000563722 1273 ntBASIC16.69■□□□□ 0.26
VPS13AQ96RL7 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 AC007389.4-201ENST00000454674 793 ntBASIC16.69■□□□□ 0.26
VPS13AQ96RL7 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS13AQ96RL7 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 RPL37AP1-201ENST00000412502 279 ntBASIC16.68■□□□□ 0.26
VPS13AQ96RL7 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS13AQ96RL7 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 BANF1P1-201ENST00000553684 263 ntBASIC16.67■□□□□ 0.26
VPS13AQ96RL7 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 RPSAP52-203ENST00000622976 1023 ntBASIC16.67■□□□□ 0.26
VPS13AQ96RL7 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.67■□□□□ 0.26
VPS13AQ96RL7 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms