Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AC009407.1-201ENST00000568958 598 ntBASIC18.42■□□□□ 0.54
LRCH3Q96II8 RN7SL219P-201ENST00000582872 296 ntBASIC18.42■□□□□ 0.54
LRCH3Q96II8 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LRCH3Q96II8 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.42■□□□□ 0.54
LRCH3Q96II8 BNIP3P29-201ENST00000598302 571 ntBASIC18.42■□□□□ 0.54
LRCH3Q96II8 AC011447.5-201ENST00000616168 564 ntBASIC18.42■□□□□ 0.54
LRCH3Q96II8 MIR6775-201ENST00000617557 69 ntBASIC18.42■□□□□ 0.54
LRCH3Q96II8 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LRCH3Q96II8 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
LRCH3Q96II8 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.42■□□□□ 0.54
LRCH3Q96II8 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.42■□□□□ 0.54
LRCH3Q96II8 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC18.42■□□□□ 0.54
LRCH3Q96II8 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
LRCH3Q96II8 AC009336.1-201ENST00000608941 1553 ntBASIC18.42■□□□□ 0.54
LRCH3Q96II8 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LRCH3Q96II8 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LRCH3Q96II8 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LRCH3Q96II8 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LRCH3Q96II8 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LRCH3Q96II8 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LRCH3Q96II8 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
LRCH3Q96II8 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LRCH3Q96II8 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.41■□□□□ 0.54
LRCH3Q96II8 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LRCH3Q96II8 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LRCH3Q96II8 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC18.41■□□□□ 0.54
LRCH3Q96II8 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LRCH3Q96II8 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC18.41■□□□□ 0.54
LRCH3Q96II8 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC18.41■□□□□ 0.54
LRCH3Q96II8 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC18.41■□□□□ 0.54
LRCH3Q96II8 GNAQP1-201ENST00000444815 1067 ntBASIC18.41■□□□□ 0.54
LRCH3Q96II8 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LRCH3Q96II8 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
LRCH3Q96II8 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC18.41■□□□□ 0.54
LRCH3Q96II8 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LRCH3Q96II8 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LRCH3Q96II8 AC133552.6-201ENST00000613406 534 ntBASIC18.41■□□□□ 0.54
LRCH3Q96II8 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LRCH3Q96II8 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
LRCH3Q96II8 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC18.41■□□□□ 0.54
LRCH3Q96II8 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
LRCH3Q96II8 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LRCH3Q96II8 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.41■□□□□ 0.54
LRCH3Q96II8 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LRCH3Q96II8 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LRCH3Q96II8 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
LRCH3Q96II8 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.41■□□□□ 0.54
LRCH3Q96II8 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LRCH3Q96II8 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.41■□□□□ 0.54
LRCH3Q96II8 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.4■□□□□ 0.54
LRCH3Q96II8 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LRCH3Q96II8 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LRCH3Q96II8 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LRCH3Q96II8 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LRCH3Q96II8 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.4■□□□□ 0.54
LRCH3Q96II8 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LRCH3Q96II8 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LRCH3Q96II8 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LRCH3Q96II8 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LRCH3Q96II8 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LRCH3Q96II8 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LRCH3Q96II8 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LRCH3Q96II8 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LRCH3Q96II8 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
LRCH3Q96II8 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LRCH3Q96II8 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC18.4■□□□□ 0.54
LRCH3Q96II8 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LRCH3Q96II8 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC18.4■□□□□ 0.54
LRCH3Q96II8 AP005482.1-201ENST00000563722 1273 ntBASIC18.4■□□□□ 0.54
LRCH3Q96II8 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LRCH3Q96II8 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC18.4■□□□□ 0.54
LRCH3Q96II8 AC008494.3-201ENST00000606615 944 ntBASIC18.4■□□□□ 0.54
LRCH3Q96II8 MIR6869-201ENST00000619434 62 ntBASIC18.4■□□□□ 0.54
LRCH3Q96II8 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.4■□□□□ 0.54
LRCH3Q96II8 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LRCH3Q96II8 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.4■□□□□ 0.54
LRCH3Q96II8 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
LRCH3Q96II8 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
LRCH3Q96II8 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LRCH3Q96II8 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LRCH3Q96II8 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LRCH3Q96II8 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
LRCH3Q96II8 AC090164.3-201ENST00000610780 2143 ntBASIC18.4■□□□□ 0.54
LRCH3Q96II8 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
LRCH3Q96II8 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.39■□□□□ 0.54
LRCH3Q96II8 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LRCH3Q96II8 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LRCH3Q96II8 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LRCH3Q96II8 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LRCH3Q96II8 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LRCH3Q96II8 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC18.39■□□□□ 0.53
LRCH3Q96II8 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms