Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC15.91■□□□□ 0.14
BEST3Q8N1M1 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
BEST3Q8N1M1 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.91■□□□□ 0.14
BEST3Q8N1M1 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
BEST3Q8N1M1 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
BEST3Q8N1M1 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
BEST3Q8N1M1 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
BEST3Q8N1M1 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 GGTLC5P-201ENST00000617623 998 ntBASIC15.9■□□□□ 0.14
BEST3Q8N1M1 AL691403.2-201ENST00000618460 490 ntBASIC15.9■□□□□ 0.14
BEST3Q8N1M1 AC055717.3-201ENST00000622967 595 ntBASIC15.9■□□□□ 0.14
BEST3Q8N1M1 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 PI4KAP1-204ENST00000612579 1703 ntBASIC15.9■□□□□ 0.14
BEST3Q8N1M1 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 AL590787.1-201ENST00000568856 1315 ntBASIC15.9■□□□□ 0.14
BEST3Q8N1M1 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 OR6D1P-203ENST00000641209 4860 ntBASIC15.9■□□□□ 0.14
BEST3Q8N1M1 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
BEST3Q8N1M1 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 LINC00896-202ENST00000609602 2128 ntBASIC15.89■□□□□ 0.13
BEST3Q8N1M1 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.89■□□□□ 0.13
BEST3Q8N1M1 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 AC112482.1-201ENST00000492080 688 ntBASIC15.89■□□□□ 0.13
BEST3Q8N1M1 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.89■□□□□ 0.13
BEST3Q8N1M1 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 IGLL3P-201ENST00000412472 434 ntBASIC15.88■□□□□ 0.13
BEST3Q8N1M1 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.88■□□□□ 0.13
BEST3Q8N1M1 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms