Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM4P67936 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
TPM4P67936 AP002490.2-201ENST00000524791 560 ntBASIC19.23■□□□□ 0.67
TPM4P67936 AC111152.3-201ENST00000569699 673 ntBASIC19.23■□□□□ 0.67
TPM4P67936 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM4P67936 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
TPM4P67936 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
TPM4P67936 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM4P67936 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC19.23■□□□□ 0.67
TPM4P67936 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC19.23■□□□□ 0.67
TPM4P67936 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
TPM4P67936 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TPM4P67936 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TPM4P67936 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM4P67936 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
TPM4P67936 AC079328.2-201ENST00000561241 3354 ntBASIC19.23■□□□□ 0.67
TPM4P67936 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TPM4P67936 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TPM4P67936 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM4P67936 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TPM4P67936 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TPM4P67936 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TPM4P67936 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM4P67936 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
TPM4P67936 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.22■□□□□ 0.67
TPM4P67936 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM4P67936 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TPM4P67936 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TPM4P67936 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM4P67936 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.22■□□□□ 0.67
TPM4P67936 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TPM4P67936 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.22■□□□□ 0.67
TPM4P67936 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.22■□□□□ 0.67
TPM4P67936 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.22■□□□□ 0.67
TPM4P67936 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM4P67936 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TPM4P67936 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC19.22■□□□□ 0.67
TPM4P67936 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
TPM4P67936 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TPM4P67936 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM4P67936 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TPM4P67936 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM4P67936 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TPM4P67936 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC19.22■□□□□ 0.67
TPM4P67936 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM4P67936 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TPM4P67936 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM4P67936 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.22■□□□□ 0.67
TPM4P67936 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TPM4P67936 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC19.22■□□□□ 0.67
TPM4P67936 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
TPM4P67936 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC19.21■□□□□ 0.67
TPM4P67936 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM4P67936 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
TPM4P67936 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TPM4P67936 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TPM4P67936 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
TPM4P67936 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TPM4P67936 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC19.21■□□□□ 0.67
TPM4P67936 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM4P67936 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.21■□□□□ 0.67
TPM4P67936 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.21■□□□□ 0.67
TPM4P67936 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.21■□□□□ 0.67
TPM4P67936 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.21■□□□□ 0.67
TPM4P67936 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TPM4P67936 AC019129.2-201ENST00000609837 1235 ntBASIC19.21■□□□□ 0.67
TPM4P67936 AL138966.2-201ENST00000621997 464 ntBASIC19.21■□□□□ 0.67
TPM4P67936 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM4P67936 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM4P67936 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM4P67936 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM4P67936 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TPM4P67936 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM4P67936 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TPM4P67936 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC19.21■□□□□ 0.67
TPM4P67936 AC067930.6-201ENST00000623257 4947 ntBASIC19.21■□□□□ 0.67
TPM4P67936 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.21■□□□□ 0.67
TPM4P67936 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
TPM4P67936 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC19.2■□□□□ 0.66
TPM4P67936 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
TPM4P67936 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC19.2■□□□□ 0.66
TPM4P67936 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19.2■□□□□ 0.66
TPM4P67936 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC19.2■□□□□ 0.66
TPM4P67936 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
TPM4P67936 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.2■□□□□ 0.66
TPM4P67936 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.2■□□□□ 0.66
TPM4P67936 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.2■□□□□ 0.66
TPM4P67936 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms