Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 AL138918.1-201ENST00000568306 659 ntBASIC19.21■□□□□ 0.67
COL11A1P12107 YTHDF3-AS1-201ENST00000603538 718 ntBASIC19.21■□□□□ 0.67
COL11A1P12107 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.21■□□□□ 0.66
COL11A1P12107 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL11A1P12107 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC19.2■□□□□ 0.66
COL11A1P12107 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
COL11A1P12107 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.2■□□□□ 0.66
COL11A1P12107 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL11A1P12107 AP3S2-216ENST00000617003 1561 ntBASIC19.2■□□□□ 0.66
COL11A1P12107 PP12613-201ENST00000424958 2230 ntBASIC19.2■□□□□ 0.66
COL11A1P12107 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC19.2■□□□□ 0.66
COL11A1P12107 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL11A1P12107 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
COL11A1P12107 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
COL11A1P12107 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL11A1P12107 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC19.2■□□□□ 0.66
COL11A1P12107 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL11A1P12107 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL11A1P12107 TSSK5P-201ENST00000423978 907 ntBASIC19.2■□□□□ 0.66
COL11A1P12107 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL11A1P12107 AC004890.2-204ENST00000481968 304 ntBASIC19.2■□□□□ 0.66
COL11A1P12107 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
COL11A1P12107 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC19.2■□□□□ 0.66
COL11A1P12107 AC008761.3-201ENST00000624803 892 ntBASIC19.2■□□□□ 0.66
COL11A1P12107 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
COL11A1P12107 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL11A1P12107 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL11A1P12107 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL11A1P12107 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
COL11A1P12107 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL11A1P12107 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL11A1P12107 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL11A1P12107 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL11A1P12107 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL11A1P12107 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL11A1P12107 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
COL11A1P12107 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC19.19■□□□□ 0.66
COL11A1P12107 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL11A1P12107 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.19■□□□□ 0.66
COL11A1P12107 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL11A1P12107 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL11A1P12107 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL11A1P12107 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL11A1P12107 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
COL11A1P12107 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL11A1P12107 FAM220BP-201ENST00000377689 816 ntBASIC19.19■□□□□ 0.66
COL11A1P12107 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC19.19■□□□□ 0.66
COL11A1P12107 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC19.19■□□□□ 0.66
COL11A1P12107 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
COL11A1P12107 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC19.19■□□□□ 0.66
COL11A1P12107 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
COL11A1P12107 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL11A1P12107 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.19■□□□□ 0.66
COL11A1P12107 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL11A1P12107 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL11A1P12107 TDG-209ENST00000544861 1387 ntTSL 2 BASIC19.19■□□□□ 0.66
COL11A1P12107 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL11A1P12107 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.19■□□□□ 0.66
COL11A1P12107 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL11A1P12107 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
COL11A1P12107 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL11A1P12107 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC19.18■□□□□ 0.66
COL11A1P12107 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL11A1P12107 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL11A1P12107 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC19.18■□□□□ 0.66
COL11A1P12107 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC19.18■□□□□ 0.66
COL11A1P12107 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC19.18■□□□□ 0.66
COL11A1P12107 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL11A1P12107 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC19.18■□□□□ 0.66
COL11A1P12107 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC19.18■□□□□ 0.66
COL11A1P12107 DUT-210ENST00000559935 569 ntTSL 3 BASIC19.18■□□□□ 0.66
COL11A1P12107 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC19.18■□□□□ 0.66
COL11A1P12107 AC073389.1-201ENST00000595595 795 ntBASIC19.18■□□□□ 0.66
COL11A1P12107 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC19.18■□□□□ 0.66
COL11A1P12107 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
COL11A1P12107 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.18■□□□□ 0.66
COL11A1P12107 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL11A1P12107 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
COL11A1P12107 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL11A1P12107 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL11A1P12107 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC19.18■□□□□ 0.66
COL11A1P12107 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.18■□□□□ 0.66
COL11A1P12107 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL11A1P12107 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL11A1P12107 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL11A1P12107 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
COL11A1P12107 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL11A1P12107 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL11A1P12107 MIR943-201ENST00000401286 94 ntBASIC19.18■□□□□ 0.66
COL11A1P12107 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC19.18■□□□□ 0.66
COL11A1P12107 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC19.18■□□□□ 0.66
COL11A1P12107 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC19.18■□□□□ 0.66
COL11A1P12107 FAM207CP-201ENST00000443486 507 ntBASIC19.18■□□□□ 0.66
COL11A1P12107 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC19.18■□□□□ 0.66
COL11A1P12107 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC19.18■□□□□ 0.66
COL11A1P12107 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL11A1P12107 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.18■□□□□ 0.66
COL11A1P12107 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL11A1P12107 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL11A1P12107 PKD1P6-201ENST00000343738 4769 ntBASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms