Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
TPM1P09493 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TPM1P09493 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.91■□□□□ 0.62
TPM1P09493 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
TPM1P09493 AC010460.3-201ENST00000511359 1579 ntBASIC18.91■□□□□ 0.62
TPM1P09493 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TPM1P09493 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TPM1P09493 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TPM1P09493 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TPM1P09493 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TPM1P09493 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.91■□□□□ 0.62
TPM1P09493 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
TPM1P09493 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TPM1P09493 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.91■□□□□ 0.62
TPM1P09493 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.91■□□□□ 0.62
TPM1P09493 AC109462.3-201ENST00000573934 613 ntBASIC18.91■□□□□ 0.62
TPM1P09493 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.91■□□□□ 0.62
TPM1P09493 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
TPM1P09493 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
TPM1P09493 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.91■□□□□ 0.62
TPM1P09493 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
TPM1P09493 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC18.91■□□□□ 0.62
TPM1P09493 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
TPM1P09493 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
TPM1P09493 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TPM1P09493 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TPM1P09493 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TPM1P09493 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TPM1P09493 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
TPM1P09493 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.9■□□□□ 0.62
TPM1P09493 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 BANP-204ENST00000393208 2283 ntTSL 2 BASIC18.9■□□□□ 0.62
TPM1P09493 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
TPM1P09493 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.9■□□□□ 0.62
TPM1P09493 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
TPM1P09493 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
TPM1P09493 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
TPM1P09493 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC18.9■□□□□ 0.62
TPM1P09493 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC18.9■□□□□ 0.62
TPM1P09493 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 AC022188.1-201ENST00000620960 1664 ntBASIC18.9■□□□□ 0.62
TPM1P09493 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
TPM1P09493 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
TPM1P09493 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.9■□□□□ 0.62
TPM1P09493 AC111152.3-201ENST00000569699 673 ntBASIC18.9■□□□□ 0.62
TPM1P09493 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
TPM1P09493 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.9■□□□□ 0.62
TPM1P09493 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
TPM1P09493 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
TPM1P09493 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.9■□□□□ 0.62
TPM1P09493 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC18.9■□□□□ 0.62
TPM1P09493 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
TPM1P09493 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
TPM1P09493 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 AC078925.2-201ENST00000624013 1973 ntBASIC18.9■□□□□ 0.62
TPM1P09493 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 AC092068.3-201ENST00000587894 2016 ntBASIC18.9■□□□□ 0.62
TPM1P09493 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC18.9■□□□□ 0.62
TPM1P09493 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TPM1P09493 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.89■□□□□ 0.62
TPM1P09493 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
TPM1P09493 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
TPM1P09493 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
TPM1P09493 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
TPM1P09493 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
TPM1P09493 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 SPDYE15P-201ENST00000424157 909 ntBASIC18.89■□□□□ 0.61
TPM1P09493 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.89■□□□□ 0.61
TPM1P09493 AL359075.1-203ENST00000462729 1002 ntBASIC18.89■□□□□ 0.61
TPM1P09493 AL441883.1-201ENST00000566170 1045 ntBASIC18.89■□□□□ 0.61
TPM1P09493 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms