Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CXCL1P09341 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
CXCL1P09341 AC139749.1-202ENST00000617529 3139 ntBASIC13.3□□□□□ -0.28
CXCL1P09341 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC13.3□□□□□ -0.28
CXCL1P09341 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
CXCL1P09341 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC13.3□□□□□ -0.28
CXCL1P09341 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
CXCL1P09341 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.3□□□□□ -0.28
CXCL1P09341 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
CXCL1P09341 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CXCL1P09341 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC13.3□□□□□ -0.28
CXCL1P09341 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
CXCL1P09341 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC13.3□□□□□ -0.28
CXCL1P09341 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC13.3□□□□□ -0.28
CXCL1P09341 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
CXCL1P09341 MMAB-206ENST00000540016 945 ntTSL 3 BASIC13.3□□□□□ -0.28
CXCL1P09341 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
CXCL1P09341 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.3□□□□□ -0.28
CXCL1P09341 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
CXCL1P09341 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
CXCL1P09341 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC13.3□□□□□ -0.28
CXCL1P09341 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
CXCL1P09341 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CXCL1P09341 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC13.3□□□□□ -0.28
CXCL1P09341 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
CXCL1P09341 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC13.3□□□□□ -0.28
CXCL1P09341 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
CXCL1P09341 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC13.29□□□□□ -0.28
CXCL1P09341 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
CXCL1P09341 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 GSN-206ENST00000394353 2311 ntTSL 2 BASIC13.29□□□□□ -0.28
CXCL1P09341 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
CXCL1P09341 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC13.29□□□□□ -0.28
CXCL1P09341 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC13.29□□□□□ -0.28
CXCL1P09341 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC13.29□□□□□ -0.28
CXCL1P09341 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC13.29□□□□□ -0.28
CXCL1P09341 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC13.29□□□□□ -0.28
CXCL1P09341 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
CXCL1P09341 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC13.29□□□□□ -0.28
CXCL1P09341 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 AC022898.2-201ENST00000616822 1312 ntBASIC13.29□□□□□ -0.28
CXCL1P09341 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
CXCL1P09341 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC13.29□□□□□ -0.28
CXCL1P09341 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CXCL1P09341 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC13.29□□□□□ -0.28
CXCL1P09341 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.28□□□□□ -0.28
CXCL1P09341 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC13.28□□□□□ -0.28
CXCL1P09341 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
CXCL1P09341 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
CXCL1P09341 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
CXCL1P09341 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC13.28□□□□□ -0.28
CXCL1P09341 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms