Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
CLPTM1O96005 BUB3-202ENST00000368859 667 ntTSL 3 BASIC16.22■□□□□ 0.19
CLPTM1O96005 MIR564-202ENST00000385049 94 ntBASIC16.22■□□□□ 0.19
CLPTM1O96005 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.22■□□□□ 0.19
CLPTM1O96005 SLC25A3P1-201ENST00000443844 931 ntBASIC16.22■□□□□ 0.19
CLPTM1O96005 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.22■□□□□ 0.19
CLPTM1O96005 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.22■□□□□ 0.19
CLPTM1O96005 AP003041.3-201ENST00000527151 707 ntBASIC16.22■□□□□ 0.19
CLPTM1O96005 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC16.22■□□□□ 0.19
CLPTM1O96005 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.22■□□□□ 0.19
CLPTM1O96005 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLPTM1O96005 AC008622.2-201ENST00000617006 1229 ntBASIC16.22■□□□□ 0.19
CLPTM1O96005 AC005363.2-201ENST00000618631 242 ntBASIC16.22■□□□□ 0.19
CLPTM1O96005 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLPTM1O96005 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CLPTM1O96005 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLPTM1O96005 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLPTM1O96005 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLPTM1O96005 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CLPTM1O96005 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLPTM1O96005 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLPTM1O96005 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLPTM1O96005 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
CLPTM1O96005 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLPTM1O96005 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLPTM1O96005 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
CLPTM1O96005 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CLPTM1O96005 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CLPTM1O96005 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.21■□□□□ 0.19
CLPTM1O96005 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLPTM1O96005 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CLPTM1O96005 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.19
CLPTM1O96005 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
CLPTM1O96005 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLPTM1O96005 MIR149-201ENST00000384879 89 ntBASIC16.21■□□□□ 0.19
CLPTM1O96005 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLPTM1O96005 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC16.21■□□□□ 0.19
CLPTM1O96005 KRT18P21-201ENST00000515767 1272 ntBASIC16.21■□□□□ 0.19
CLPTM1O96005 PPOX-219ENST00000544598 813 ntTSL 2 BASIC16.21■□□□□ 0.19
CLPTM1O96005 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLPTM1O96005 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
CLPTM1O96005 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLPTM1O96005 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLPTM1O96005 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CLPTM1O96005 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CLPTM1O96005 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CLPTM1O96005 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLPTM1O96005 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLPTM1O96005 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLPTM1O96005 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CLPTM1O96005 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
CLPTM1O96005 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CLPTM1O96005 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
CLPTM1O96005 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
CLPTM1O96005 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.2■□□□□ 0.18
CLPTM1O96005 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.2■□□□□ 0.18
CLPTM1O96005 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
CLPTM1O96005 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
CLPTM1O96005 AL163051.1-201ENST00000569214 1512 ntBASIC16.2■□□□□ 0.18
CLPTM1O96005 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CLPTM1O96005 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
CLPTM1O96005 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CLPTM1O96005 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 AC005521.1-201ENST00000393351 872 ntBASIC16.2■□□□□ 0.18
CLPTM1O96005 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CLPTM1O96005 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
CLPTM1O96005 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC16.2■□□□□ 0.18
CLPTM1O96005 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.2■□□□□ 0.18
CLPTM1O96005 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CLPTM1O96005 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CLPTM1O96005 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CLPTM1O96005 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.2■□□□□ 0.18
CLPTM1O96005 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CLPTM1O96005 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.2■□□□□ 0.18
CLPTM1O96005 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLPTM1O96005 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLPTM1O96005 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.19■□□□□ 0.18
CLPTM1O96005 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLPTM1O96005 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
CLPTM1O96005 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms