Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LDB2O43679 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
LDB2O43679 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB2O43679 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LDB2O43679 FLJ38576-201ENST00000623820 2459 ntBASIC17.09■□□□□ 0.33
LDB2O43679 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
LDB2O43679 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB2O43679 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB2O43679 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB2O43679 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB2O43679 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.08■□□□□ 0.33
LDB2O43679 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
LDB2O43679 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.08■□□□□ 0.33
LDB2O43679 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LDB2O43679 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.08■□□□□ 0.33
LDB2O43679 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
LDB2O43679 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.08■□□□□ 0.33
LDB2O43679 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.08■□□□□ 0.33
LDB2O43679 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LDB2O43679 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.08■□□□□ 0.33
LDB2O43679 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.08■□□□□ 0.33
LDB2O43679 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.08■□□□□ 0.32
LDB2O43679 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.08■□□□□ 0.32
LDB2O43679 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 TUBB8P12-201ENST00000308911 1335 ntBASIC17.08■□□□□ 0.32
LDB2O43679 TUBB7P-202ENST00000428444 1305 ntBASIC17.08■□□□□ 0.32
LDB2O43679 TUBB8P7-204ENST00000567960 1332 ntBASIC17.08■□□□□ 0.32
LDB2O43679 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.08■□□□□ 0.32
LDB2O43679 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.08■□□□□ 0.32
LDB2O43679 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.08■□□□□ 0.32
LDB2O43679 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.08■□□□□ 0.32
LDB2O43679 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.08■□□□□ 0.32
LDB2O43679 AL805961.1-202ENST00000641562 540 ntBASIC17.08■□□□□ 0.32
LDB2O43679 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
LDB2O43679 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.08■□□□□ 0.32
LDB2O43679 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
LDB2O43679 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
LDB2O43679 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
LDB2O43679 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
LDB2O43679 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LDB2O43679 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.07■□□□□ 0.32
LDB2O43679 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDB2O43679 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.07■□□□□ 0.32
LDB2O43679 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDB2O43679 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB2O43679 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB2O43679 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB2O43679 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB2O43679 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
LDB2O43679 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.07■□□□□ 0.32
LDB2O43679 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.07■□□□□ 0.32
LDB2O43679 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.07■□□□□ 0.32
LDB2O43679 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB2O43679 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB2O43679 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB2O43679 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.07■□□□□ 0.32
LDB2O43679 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB2O43679 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB2O43679 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB2O43679 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
LDB2O43679 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB2O43679 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.07■□□□□ 0.32
LDB2O43679 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.07■□□□□ 0.32
LDB2O43679 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.07■□□□□ 0.32
LDB2O43679 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.07■□□□□ 0.32
LDB2O43679 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LDB2O43679 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB2O43679 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.07■□□□□ 0.32
LDB2O43679 AF186996.4-201ENST00000467186 377 ntBASIC17.07■□□□□ 0.32
LDB2O43679 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.07■□□□□ 0.32
LDB2O43679 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.07■□□□□ 0.32
LDB2O43679 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.07■□□□□ 0.32
LDB2O43679 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.07■□□□□ 0.32
LDB2O43679 AC012640.2-201ENST00000561606 901 ntBASIC17.07■□□□□ 0.32
LDB2O43679 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.07■□□□□ 0.32
LDB2O43679 AC008735.5-201ENST00000623544 497 ntBASIC17.07■□□□□ 0.32
LDB2O43679 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB2O43679 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.07■□□□□ 0.32
LDB2O43679 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
LDB2O43679 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.07■□□□□ 0.32
LDB2O43679 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LDB2O43679 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms