Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDCBPO00560 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SDCBPO00560 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC14.61□□□□□ -0.07
SDCBPO00560 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDCBPO00560 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC14.61□□□□□ -0.07
SDCBPO00560 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDCBPO00560 SLC25A1P3-201ENST00000395415 828 ntBASIC14.61□□□□□ -0.07
SDCBPO00560 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDCBPO00560 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC14.61□□□□□ -0.07
SDCBPO00560 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC14.61□□□□□ -0.07
SDCBPO00560 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC14.61□□□□□ -0.07
SDCBPO00560 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC14.61□□□□□ -0.07
SDCBPO00560 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC14.61□□□□□ -0.07
SDCBPO00560 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC14.61□□□□□ -0.07
SDCBPO00560 TMED1-207ENST00000591695 809 ntTSL 5 BASIC14.61□□□□□ -0.07
SDCBPO00560 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SDCBPO00560 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
SDCBPO00560 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDCBPO00560 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC14.61□□□□□ -0.07
SDCBPO00560 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDCBPO00560 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDCBPO00560 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.61□□□□□ -0.07
SDCBPO00560 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SDCBPO00560 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
SDCBPO00560 TBC1D3P5-201ENST00000579401 1545 ntBASIC14.61□□□□□ -0.07
SDCBPO00560 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDCBPO00560 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SDCBPO00560 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.6□□□□□ -0.07
SDCBPO00560 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC14.6□□□□□ -0.07
SDCBPO00560 PCDHA1-201ENST00000378133 2726 ntBASIC14.6□□□□□ -0.07
SDCBPO00560 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC14.6□□□□□ -0.07
SDCBPO00560 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC14.6□□□□□ -0.07
SDCBPO00560 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC14.6□□□□□ -0.07
SDCBPO00560 PC-208ENST00000529047 1607 ntTSL 3 BASIC14.6□□□□□ -0.07
SDCBPO00560 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.6□□□□□ -0.07
SDCBPO00560 AMT-250ENST00000637682 1823 ntTSL 5 BASIC14.6□□□□□ -0.07
SDCBPO00560 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC14.6□□□□□ -0.07
SDCBPO00560 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 GUK1-204ENST00000366721 689 ntTSL 3 BASIC14.6□□□□□ -0.07
SDCBPO00560 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC14.6□□□□□ -0.07
SDCBPO00560 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC14.6□□□□□ -0.07
SDCBPO00560 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC14.6□□□□□ -0.07
SDCBPO00560 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC14.6□□□□□ -0.07
SDCBPO00560 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC14.6□□□□□ -0.07
SDCBPO00560 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC14.6□□□□□ -0.07
SDCBPO00560 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC14.6□□□□□ -0.07
SDCBPO00560 AC011498.5-201ENST00000592027 486 ntBASIC14.6□□□□□ -0.07
SDCBPO00560 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
SDCBPO00560 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 LTF-203ENST00000426532 2494 ntTSL 2 BASIC14.6□□□□□ -0.07
SDCBPO00560 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 HYMAI-201ENST00000635591 3347 ntBASIC14.6□□□□□ -0.07
SDCBPO00560 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC14.6□□□□□ -0.07
SDCBPO00560 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC14.6□□□□□ -0.07
SDCBPO00560 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SDCBPO00560 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC14.6□□□□□ -0.07
SDCBPO00560 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
SDCBPO00560 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SDCBPO00560 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SDCBPO00560 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SDCBPO00560 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
SDCBPO00560 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SDCBPO00560 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.59□□□□□ -0.07
SDCBPO00560 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SDCBPO00560 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
SDCBPO00560 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC14.59□□□□□ -0.07
SDCBPO00560 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC14.59□□□□□ -0.07
SDCBPO00560 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SDCBPO00560 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
SDCBPO00560 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SDCBPO00560 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC14.59□□□□□ -0.07
SDCBPO00560 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SDCBPO00560 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC14.59□□□□□ -0.07
SDCBPO00560 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SDCBPO00560 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SDCBPO00560 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC14.59□□□□□ -0.07
SDCBPO00560 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms