Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 AL136379.1-201ENST00000623471 2642 ntBASIC12.55□□□□□ -0.4
SMKR1H3BMG3 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 REXO1L10P-201ENST00000615707 1290 ntBASIC12.55□□□□□ -0.4
SMKR1H3BMG3 REXO1L12P-201ENST00000622156 912 ntBASIC12.55□□□□□ -0.4
SMKR1H3BMG3 TBCB-214ENST00000629269 413 ntTSL 5 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 AMT-250ENST00000637682 1823 ntTSL 5 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 AL365203.3-201ENST00000609742 2057 ntBASIC12.55□□□□□ -0.4
SMKR1H3BMG3 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
SMKR1H3BMG3 AC067930.6-201ENST00000623257 4947 ntBASIC12.55□□□□□ -0.4
SMKR1H3BMG3 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 PRR31-201ENST00000371629 978 ntTSL 2 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 SLC25A1P2-201ENST00000430693 912 ntBASIC12.54□□□□□ -0.4
SMKR1H3BMG3 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 PHB2-202ENST00000440277 996 ntTSL 5 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 ADM-205ENST00000528544 586 ntTSL 2 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 BX088651.1-201ENST00000540551 451 ntBASIC12.54□□□□□ -0.4
SMKR1H3BMG3 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms