Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 IPPK-202ENST00000375522 882 ntTSL 3 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 CD9-202ENST00000382515 1229 ntTSL 5 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 CLEC4GP1-201ENST00000596555 870 ntBASIC13.88□□□□□ -0.19
FOXA2Q9Y261 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 CCNC-219ENST00000627680 896 ntTSL 5 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA2Q9Y261 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 NFIC-211ENST00000641145 8399 ntBASIC13.87□□□□□ -0.19
FOXA2Q9Y261 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 FUT8-AS1-201ENST00000621019 1521 ntBASIC13.87□□□□□ -0.19
FOXA2Q9Y261 FER1L4-210ENST00000615531 5998 ntBASIC13.87□□□□□ -0.19
FOXA2Q9Y261 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 KRT16P4-201ENST00000453883 522 ntBASIC13.87□□□□□ -0.19
FOXA2Q9Y261 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 BET1L-206ENST00000486280 665 ntTSL 3 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 FOSL1P1-201ENST00000511041 816 ntBASIC13.87□□□□□ -0.19
FOXA2Q9Y261 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 FICD-205ENST00000552758 603 ntTSL 2 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 LINC01711-201ENST00000598340 967 ntBASIC13.87□□□□□ -0.19
FOXA2Q9Y261 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 KRT8P10-201ENST00000450021 1447 ntBASIC13.87□□□□□ -0.19
FOXA2Q9Y261 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 AL353593.2-201ENST00000602529 1483 ntBASIC13.87□□□□□ -0.19
FOXA2Q9Y261 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
FOXA2Q9Y261 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA2Q9Y261 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms